GgaINT0030406 @ galGal4
Intron Retention
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1976716-1977343:-
Coord C1 exon
chr10:1977227-1977343
Coord A exon
chr10:1976883-1977226
Coord C2 exon
chr10:1976716-1976882
Length
344 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGA
5' ss Score
4.37
3' ss Seq
ATGTCTTCTTCTCTGTATAGCTT
3' ss Score
9.28
Exon sequences
Seq C1 exon
AGGCAAATCGCAGGTGGCACTGAAAATCATAAAAAACGTTGGGAAGTACCGCGAGGCAGCCAGGCTGGAAATTAATGTCCTGAAGAAAATCAAAGAGAAGGACAAGGAGAACAAATT
Seq A exon
GTAAGACTGGAATACGTGGCAGGAGAAACCTGGCTTATGCCTCTGTGTTTTGGGAGAGCCTGTCCCTGATTCTGCTGCAGACTTGTTTATTGAAATCTTAACAGCTGACATGCTGGGTTATAGTGAGGAAAAATTAACCACAACTTAACTCTGACACGAGAGTCAGAGTATTAGAGATCTTTACATGAAGGTGGTTAAGCAAAGTGGGGAAGGGGTGTGCAAATAGGATTATTGTGCTTCCGAGTCAGCTGGCTCAGAGCTTTTGCTTTGCAACAGCTGGGAGAATTACTGTACTGTCAGGTCTCTGAATGATGCTTAATGCTCATGTCTTCTTCTCTGTATAG
Seq C2 exon
CTTGTGTGTCCTGATGTCAGACTGGTTCAACTTCCACGGCCACATGTGCATTGCCTTTGAACTTCTTGGCAAGAACACTTTTGAGTTCCTGAAGGAGAATAATTTCCAGCCATACCCTCTCCCTCAGATCCGGCACATGGCCTACCAGCTCTGCCATGCCTTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362:ENSGALT00000002079:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
NA
C2:
PF0006920=Pkinase=FE(17.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGCAGGTGGCACTGAAAA
R:
ATTTCAAGGCATGGCAGAGCT
Band lengths:
279-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]