RnoINT0037397 @ rn6
Intron Retention
Gene
ENSRNOG00000030126 | Clk3
Description
CDC-like kinase 3 [Source:RGD Symbol;Acc:621259]
Coordinates
chr8:62532027-62532907:-
Coord C1 exon
chr8:62532791-62532907
Coord A exon
chr8:62532194-62532790
Coord C2 exon
chr8:62532027-62532193
Length
597 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
CACCTGTCTTTTTTCTCTAGCCT
3' ss Score
8.7
Exon sequences
Seq C1 exon
AGGGAAGTCACAGGTTGCCCTGAAGATCATCCGTAATGTGGGCAAGTACCGGGAAGCTGCTCGTCTAGAAATTAATGTTCTCAAGAAAATCAAGGAGAAAGACAAAGAAAATAAGTT
Seq A exon
GTAAGTATCTGCAAAGAGTGCACAGGCATCACTCAGTGGGGTGGCATTCTCTAGTTCCAGCTACCTCGACTCCCTGGGAACATCTCCGTGTCCCCGCATTTGGTACTGTTCCTGGGAATCTGACAGGTGTTCTTTTTGTAGAGCCCTTGAACTTCAGGCTCTACCCTGCCTGGCTTTGTGTTCTGGAGTAGCCCAAGCCCTGCATTTATGAGTTAAGGGACGTAACAGGTTGGGGACACTTAAGACACCAGTCAGCTTCTCTACAAGCACTTAACTGTGCTACAGTCAGCACAGGCGGTGCACCTGACCAGGTCCTCAAGAAGCTGAGCAGTACATGGAGGCCTGCGCTGTACTGGTGCCATTCTATCTGCCCCTCAGTGACTGTTAGGGCTGCCCACTCTGGGTGCCATGGGTGAGCTGGGATCAAAATGTAGCCCCTCTACACAATGGGAAGTACAGTTTTTGCTTAGAGTCTAGCTGTGTGACAGTGGATTGCAACATGTGCTCTGGCTCTGAGGCTTACAGAACAGTGGCCTTTTGGGGGCGGGGGAGGTCAGGTGAGGCAGAGCTTGAACCCCACCTGTCTTTTTTCTCTAG
Seq C2 exon
CCTTTGTGTCCTGATGTCTGACTGGTTCAACTTCCATGGTCATATGTGTATCGCCTTTGAGCTCCTGGGCAAGAACACCTTTGAGTTCCTGAAGGAGAACAACTTCCAGCCTTATCCCCTACCACATGTCCGGCACATGGCCTACCAGCTCTGTCATGCCCTTAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030126:ENSRNOT00000068108:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.3=100)
A:
NA
C2:
PF0006920=Pkinase=FE(17.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGTCACAGGTTGCCCT
R:
AAGGGCATGACAGAGCTGGTA
Band lengths:
279-876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]