GgaINT0031292 @ galGal3
Intron Retention
Description
NA
Coordinates
chr9:21904391-21905069:-
Coord C1 exon
chr9:21904947-21905069
Coord A exon
chr9:21904514-21904946
Coord C2 exon
chr9:21904391-21904513
Length
433 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CCTTTATGCCTGTTTATTAGATG
3' ss Score
6.17
Exon sequences
Seq C1 exon
ACCTGGATGAGTGCGAGACCGGCGAGTCGTGCTGCTCCCAGTTCTGCATCAACTACGTGGGCAGCTACGAGTGCACCTGTAGAGCAGGCTTCCAGCCCAGTGCCGATGGCTGCAGCTGCGACG
Seq A exon
GTGAGTGCCCCACACTGGTCACACTCAGCTCAGTGAGGTTTAAAAAGTAAATCTCTACTTTGTAATGCTGGAATACAGTAAGACAGCATCCAGCAAGGATGGATGGTCTGTGGGAGATGAATCAGGGACCTTTTCCCCTCTCTCTGTGCATGCTGTATGTGGATGTGTTTTAAAGACTACTTCTGCAAAAGGAGAGCCCTCAAAATAGCCAAGGGATCAACAGAGCTTAACAGCTTAGAGCAGCTGTTTTCACTTGAGGCAAAAAACATAGGTGGAATGATCTCTTCCATGCTGAGCTGAAATGTTTTAATACCCTCAATAACCCCAAAGTACTGAGAAAATTTGGTTTCCTTATGTTCAGAATAGCTCTGGCCCTGTACAGAGAGCGCTCTCTCAATAGAGGCACTAACCAGCCTTTATGCCTGTTTATTAG
Seq C2 exon
ATGTGGATGAATGTCGTCTTGAGAATGGCAACTGTGACCATATCTGCATTAATTCCCTGGGGTCATACGAATGCGCCTGCAAGGAGAGGTACCGGCTGGGTGCTGACCGGCGCTCCTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGATGAGTGCGAGACC
R:
GTCAGCACCCAGCCGGTA
Band lengths:
230-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]