RnoINT0001320 @ rn6
Intron Retention
Gene
ENSRNOG00000023908 | AABR07009919.1
Description
EGF-like and EMI domain containing 1 [Source:NCBI gene;Acc:310269]
Coordinates
chr2:117109516-117116238:+
Coord C1 exon
chr2:117109516-117109638
Coord A exon
chr2:117109639-117116037
Coord C2 exon
chr2:117116038-117116238
Length
6399 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
3' ss Seq
CTCTCTCTCTTTGGCCTTAGCTT
3' ss Score
9.11
Exon sequences
Seq C1 exon
ACTTTGATGAATGCAAGAGCGGAGAAGCCTGCTGTGCCCAGCTCTGTATCAACTACTTAGGAGGCTATGAGTGCAGCTGTGAGGAAGGCTTTCACATCGATGCGGATGGTTGTGGATGTGACG
Seq A exon
GTAAATTCCTGAGATCTCCTGGAACAACCGATGTGATGTACAGTCTGTGGGTGGGAGCTGGGAAGGAAGCCATTTCATGCTGAAGAAACGTGGATTTCTGTGTTTACACTCTGTGATGGCATCTGGGCTTTGGTGGCTCTAACTTTGGAGAACCCTAGAACTTCGTCACTGAAATGAAGACAGCAATAGAATTAAAGAGTAAAATAAGGAAAGTTTATAATAAAAGTAAAGTACTAGCATGATGTTTGACCTAGATTACCACGCCACTAAGGTTAATATGATATTCCTTGGTCCATAATACTTTTCACAGATATGTGTGCAGAGGAGAATGAGGGACACACTGCTAATTTCTAACATGCTGGGCCACAATTACAAAGTTGGCTGCTGAAAGTCATTTTCAAGAGGAATCAAATGAGTGAATTATCTTGTCATAAGAGTGAAAAACCTGCAGCAGGATTTCTCACATATTAACAAAGCCAAGGCCACCTTTAGATGTGTCATCTCACAAATTTCTATATTGTTAAAATTAGTGCACTTCTAGGTCCATTCGAGACTAGCTTACATTTTTCTTAACAAAGGGGAATCTTGAAATTAACCAGTTAATGGTATCCCATCACCCACTTATCCCCGAGATTTGGTCAAAAACTCAGCCAACTTCACTGATGAGGATAGTTAAAGCCCCTTATCTCAAACAGCGAGGGGGCAAAGTGATCAAGGAAGATAGTGATGTTGACTCTCAGACTTTAAGCACATGAGCATACACAGAGATGGACACACACACACACACACACACACACACACACACACACACATGAGACAGACAGACAGACAGACAGACAGACAGGTACACTAATAGTTCCTATAAGTCCTTACTTCACCCTGAGGTTTCCTTCAAAAAATCATGTGGTGTACACTGTTCAGCCCCCCAAGTATTTTTGAGTTATTTACAAATAGTGTCTCTTGATGTTGATTTTTAGTTCTATTCAACTGTGATATGATAGGTGGTGATGCATTATTTCAGTTATTTTGTGTCTGTTAAGTTATTTTATGGCATAGAATGTGGTCTATTTTGGAGTTCTATGCATACTCAGAATGTTTATTGTATATCTGCTGAATAGAATATCCTGTAGATATGTGTTAAGTCCATTTGATCCATGGTATAGTTTAACTCTGAAGTTTCTTTGTTCATCTTTAGTTTGGATAAACTCTCTAAACATAGGGTTATGATACTAAAGTTAACTATTACCACTGCTTTAGGACTTATGTAATTTTAAAATTCCCATTAGTGTTTGTTTTATGACAATGAGAACTACAGTGCTTGGTGTATATTTATTTATAATTGTTACATTTCCTTGATGAACTGTTCATTTTATGAATGTTACCTTCTTTATGTATTTGGCTTAACACTGGTTTGAAGTCTATGTTATCAGCTCTCAGAATAGCTATACTAATTTGGTTTTGGCTTTCTTTTACTTCATAAATTGAATTCTATCATTTGACTCTCAGTTTATGACTGTTTATGGCAAGAATATGTTGTTGTGTACAAAACTTTTTCTGCAGAGACACTATACATATGTCTTCTCACCCCAACTAAGGAGCCCATGAAAGGCTCCCTATGGATACCACCAGAGTACATACACCAGAGGTGGACCATTGGTTTCACTGGGTTACATACAGGAGTATTGGTAAGAGTTTATTTACAGTAGCAGGAATGACTCAAAGACAGCTGCATCACCAAAGCCTACCCAGCACAGGTGTCAGTTCATACAAGCTAAGAATCTTGGAAGCCACTGAACATCCTGCAGGCAGCTTAACAGGTTGAAGAGTGTCCTCTTCTAGGCAGCTGGGTTGGTTTCTGCTCCTTCTGGACCTCTGGTCTCGGTTCAGAGTCTTCTTTGCAGCTCAGCTTCACCCTACAGAGAGGGGCTTTCTATTTTTGTTGCTTACTCTAGTAAGGAGGGGCCTAATGAATCTGGTCAGTTTCAGGAACTTACTTAATCTTTTGGGTTGTTTACCTTACTGCTTAATAATGAACTTCCCCTGAAGGATAGAATGTACATTTTTTGGAAGAAAAAAAAAAGATAGTTGGAACTTAATAGAGCCAACCATTCTGCAACTCTTTTTTAGTTAAAGTCATTTATACTTAAGTTTATTGTGAGAGAAGCTGCCAGTTTATTGTTTTATTTTTTGTTTCTGTTGTTAGGTAGATTCTTGCTTTTTCGTTTTTCTCTCTTCTATTACCATCAGGCTTTTCTGGTTAGTGTATTCTTTTCTGGCTAATTTTTGGTCCCCTACTCTTCTCAGAAGACTTATTAATTCTTTTATTTTCCTACTTGAACATATCTTCCTTTAGAAAACATATAAACACCTGGCATCTATAGACTGAGTGATGCATACTTTGAGGGAGAAAGAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATATGGGTACAGTCAGTCAAGTACATGTGGAAGCCAGAGATTGATGTTAGCGCCTCTCTCAAGTGCTTCTCCAAAATATTTGTGAGATAGAGCCTCTCACTGCACCTGTTGCTCACTGGTTTCTGCTGGACATGTTGACAACTGACATCCCAGGATACAGCTGTCTGTACCAGCCAGCACTGTGTCATAAAGTAAATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCCCTGTACAAAAATCAATTCAAAGTGGACCACATATCTTAATAACATACATGAAACTGAGGAGTGCTCGCAGAAACTCTAAATAAAACACTTCGAGATAGAGCCGTAAGAAAGTCTCCAGTGCCAAGGGAAAAATCCCAATAATTTACAAATTAGATTACAAGGAATTAAAAATGCTTCTTCACAGCAAAAGAAAAAATCACTGAGGGAAAAGACAGTCTAAGGAGCAGAAAAAAGCAGTTGCCAGCGCACATCACAGAGTAGATTAATAGCTACCACATATAATACCTGCAAAATTTTAAAAAATATTCAACATATCCTGTAAATAGCTCAATGAACTTAATAGCTATTAGTTATCAAAAGAACAAATACAAATAACCTAATATTTGTAAGAGTGTTTAATATGCTTAGCTACCAGAGAAATGCACATTAAAGCTACTTTTAACTTCCATCTCATCTAAGTGACCATTAAAAATAAGACTGAAGACAAAGAAAGAGGATCTCATGCCTGCTAGAGAGAAGGCCAAGCTTTCTAGAAATCAGGGAGGATTCTCCAAGTTCTGGAGTTAGAACTACCATGTATCAGAGGCTCACCTCCCTGTATGGACTGGAAAGGGCGAGGTCAAAAGCCACATAGTCCTTCATACTCCTATTCATTGATCTACTGCTCACAGTAACCAAGATACAGAGCCAGCCTATATATCCATAGGCAGAAGAATGGATAAAAATATATGTGATACACACACACACACACACACACACACATATACACACACACACACACACACACACACACCCTAGAATTTCATCTCTCAAGAAAGATGAAATCAGGCCATTTTCGGAAAAAACATATATAACTAGGGATCATTTACATTGAGTGAAATAAAATTGATCCAAAAGAAACACAGTTGCTACATTTATTCTTCATGTAAATTATGAACATTTAAATCTATTTGTCCGTTTAAAGTAGAAAGGAGACAGCAAGGGGGAAGGGTGACAAGATAAGTGGGAGTGACTACAGGGTGTGGTGGGAGTGGCTAGAGAGTGTGATCAGTGACTAAAGGGAGTGATGGGAGTGGCTAGAGGGTGTGGTGGGTGTGGCTAGAGAATGTGATGAGCATAAGTGACATAGAAAAGAAAAACAGACTCTGGAGCAGGAAGGAATTAAAAATGGAGACAAAGGGGTGAGATAGGGCAGCAGGAAAAGGTAAGAGTGAGAATAAAATTGCATGGCCTATGTGTATGAACACACCAGAGTAAAATGAACTGCTTTGTATGGTAACTTAAAAATAATTAAAAACAAAAAAATTACCTCAATATATAATTTTAAAAACTTGTTATCGTTACTATTATGACTATTAAAAACATTTTCTTGAAGCCTGTACAAAGTTCATAATATTACTATCTACTCCAATAGCAGGTCAAATATATGACATTAATGTCACTGAGAAAGTGGAGTTTCATTGCTTAAAGAAACAAATCCTGAATTGTGATGGGAGCCAGGTTTTTAACTACTACAAGCCAGCCCTTCAGTATATATCAAAGAAAAACACAGTGTGATATCTATATATACCAAACACAGTGGAGTATATTACCATTTACCATTTCCATCCAATTAACAGAGCCAACAAAAGCTGCATTTTATGCACCATCTGTTCCTAAGTAGAGTGAGCCAAGATATGATTGCATGGCACAAATGCACACACTTGCACACATCCACAGTGGTAAGGTGTGCACCATCTGAAGCGAAGCTGAAGTGTGGCTTAATTCTGGGACCTTCTGTGTCTCTAACACACTGAGTGAATCTATCTGAGTCTAGATTCAGTCATAAAACAGATATATGGGAACAGGCTAATTAGTATTCTTCTATATCAAACCTTCTTCCCTTGGTGGAATTATGAAAAAAAGAAAGTAATTGTTCAGTCACGTACTTGAGTCAAGCAGTTAGTACATTGTTGCAGACAGAATAAGGCACAGCTTGAAACCATTGAATTTAAGTTTTATGTTCCTCATCCAAGCTACACAAACAGGGCATCAGAAAGCCTTGATTTATGTGCTGTCTTCATAAACTTGCAAAAGAAAGGAAGTCACTAGGTAGATGTGCCAGGTAACCAGGGGTTCTGACTGCTTTCTGTGTGGTAGAGTGCTGCTACTGGTTAATGGAGGTCGCACAGTGCCACAGAGGGCGGAGGCTGTGTAGCTCTACTCTCCCAAGATGTGGATGAGTGTTTGAATGTCAGTGTGAAGAGTAGTCAGCTGTGCATCAACTCCATGGGGACATGTGACTGTGCCTGTGAAGAAGGATACAGAATCGGAAATGATGGAAGAACCTGTCTCTGTCAGTAGTCTAGAGATTGTGCTGAGTCCTTCCTAACTTCCTCCTGCTGCTCTTCAGCATGCTGCAGAGGAAACTTCACACCCCTCGCTACCTCCATCCTTCAGCTCACTCTGTCTCTCAATCTGTCTCTCTCTCTCTCTCTCTGTCTGTCTCTGTCTCTCCCCCTTTCTCTCTTCTCTCTCTCTCTCTGTCTCTGTCTCTCCCCCTTTCTCTCTTCTCTCTCTCTCTGTCTCTCTATCTCTCTCTGCCTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTCTCCCCCTTTCTCTCTTCTCTCTCGCTGTCTCTGTCTCTCTGTCTCTCTATCCCTCTCTGTCTCTGTCTGTCTCTGTTTGTCTGTCTCTGTTTGTCTGTCTCTGTCTGTCTCTGTCTCTCTCTGTCTCTGTCTGTCTCTGTCTCTCGCTCTCTCCCCCTTTCTCTCTTCTCTCTCTCTGTCTCTCTCTCTGTCTCTCTATCGCTCTCTGTCTCTCTGTCTCTGTCTTTCTCTGTCTCTCTGTCTCTGTCTGTCTCTCTGTCTGTCTGTCTGTCTCTGTCTCTCTCTCTGTCTCTCTGTCTCTGTCTGTCTCTGTGTCTCTCTCTCCCCCTTTCTCTCTTCTCTCTCGCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTATCTCTCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTGTCTCTCTCTGTCTCTGTCTGTCTGTCTCTGTCTGTCTCTGTCTCTCTCTCTGTCTCTGTCTGTCTCTGTCTCTCTCCCCCTTTCTCTCTTCTCTCTCTCTTCGTGTTCGCTCTCTGTCTCTCTATCTCTCTCTGCCTCTCTGTCTCTCTGTCTCTGTCTCTCTCTCTGTCTCTGTCTGTCTCTGTCTGTCTCTCTCTCTCCCCCTTTCTCTCTTCTCTCTCTGTCTCTCCCTCCTACCCCTCTCTCCCTCCCTCATCCCCTCTCCCTTTCCTTCTTTATTCTCTCTCCTTTTTCTCACCCCTGTCCATTACTTTTCTCTTCTCTTTCTCTCTGCCTCATTCCTTTCCTCCTTCCTGGTTTTCTCTACCCTCTTTTTTTTTTCTTTTTTCTAGCCTTATTTTATTTCCCTTGTATTCTGTCTACTGTAATTCAACCCCATGCCAGCAGCATCTGACTCTTGGTACAACAGGCCTTGGCAAAGCCTGCTCAAAGCTCTTTGCACATTAGTCATCCCTGTTTGGCTGTCTAGTTCAGACTCTCACTGTCTGTCAATGCTTGGTTGCTTTTTCCGTCTTCTTTCCACACTGCTGAAACTCATTTTTCTCTCTCTCTCTCTCTTTGGCCTTAG
Seq C2 exon
CTTTAGACGATGAACAATTAGAGGAGGAAGAAGAGGAAATAGACATCCTGAGGTTTCCAGGCCTTCTGGTTCAGAGCCTACCTCAGCCACTCCCTTATCTGGATCCTTCTCTGACTGCTTCATATGAAGATGAAGACAATGATGATGCAGTCCACGGAGCAGAAGGAGAGTTCCAAGGGCTGGCTGCCTTGCACAGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023908:ENSRNOT00000039603:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]