GgaINT0031674 @ galGal3
Intron Retention
Gene
ENSGALG00000010361 | MBNL1_CHICK
Description
NA
Coordinates
chr9:24953672-24956773:-
Coord C1 exon
chr9:24956679-24956773
Coord A exon
chr9:24953747-24956678
Coord C2 exon
chr9:24953672-24953746
Length
2932 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
TTACATTTTTTTACCCATAGATA
3' ss Score
9.91
Exon sequences
Seq C1 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCTGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq A exon
GTTTGCTAATTTACAGCTTTGTTCCTTACAGACATCTTGAAATCAGTGCTTTAATGAGCATGGGGGTTTTGATTATGCCTCTTGTTGGCCTACACATTCTCTGTAAGATCTGCGGCACAGCTTAATAAGCTTTTATCCATGCTCCAAAGGTGCTGCAGTTCCATTTCTGATGCTAAAAATAATTGATAATGGAGTTTCTGACTCAGTCTCAACATTTATGGGCCATGCTGCTTATTTCTGCTCTCAGAGATGCAAAGAGAAAGGGATAATACGAGGAACCCATTACTTATTTCTATTTCTGTGAAGCCCACGGTTCCTCTTTGTGTAGAACTCCACTCAGATCAGTACAGCTTTTGTGCAGGGGGATGGCAGGATCAGGGCTGTAACTCTGAACTTAGCAGTCTGGCCGTGTTCTGATGCTCCTCAGCTCTTCCAAAAGCCAAACAAAGACATTTGGGGCTGGGCCACACAGAGGCAGGATTTAAACCTTTGTTTCTACTTGTGATTCTGCTAGGCCAGGGCCAGTTACTTTCTGCACTAGACAAACTTGTGTTAATAAAATGCCCACTAAGATCTGACTTTATTTCCAGATAGTTACCCCAGTTGTTCCCATGTTTGGATGTCTTTTTGGAAAAAAAATAAGAATAGTGTTTTAATGAATGAGCAATCAGAAATCCTGCCAGGAGAGCCCCAGAGAGAGCCTGCAGTGGGGATGAGCACCAGGGCTGGTGTGGAGTGGCCCTGAGGGCTGCACCTGCACGGCTGAGCTGTGGGAGGGCATTCCCACACAGTACGTGGCTGAGGATGCACCAGGAGAAGCTTTTAAATGACAATCTTGTTTCTCTTAGAAAAGAAAAAAGAAAAGATTTTGTGAGTTGTACTAGAAAGTGAGAATTGCCATGTGTCCTTAAGCCATCAGTTCTGCTCTGAGTGAGGAGTCACACAGGTGCCTTTTAGAAGAGGGGAGGAAACACTGCCCATAACGTCTTGCAGGTGTGGTTCTGTATGGTTGTGGATCCTGGTGGTAGAGGTCAGTTCGTGAGACAGGCTCCCCAATCCCCTGCAGTGCCCCTACCCGTGCCGTGGTGCTGGGGCCACTTAGCGAGGGCTCAGAGGTGCCATTCCAGAGGTGATGCTATTGCAGGATGCCCAGTGCTGGCAGCCCAGGCCTTACAACCACCTTAGCGTTGTACATCCCCGAACAGAGCTCCTGTGACTCTGCCTTGCAGGGCGAGATGTTGGCCGAGTGGCCATGGCCGGGGTGCAAACCAGCACGAGAACTGCTGGGTGTTTGGCAGGGCCAGCCTAGAGCTACACCTGCCTCTGCTTACATGTCACCGAAGCATCTCAGTGCCACAACGGACTGCACTGCACAGTTAGTTTAAGGATTTGTCCTTAGGTTCTCCGTTGGAGCAAAGGGAACAAGTCAAGCCACGGAGAGTCATCGTCAGTTTTAAAATCATCTTTGTCCAAATTGCCATGCATTTTCCCAGACAGATCACAGGGAAGCTTTCCGTTGTAGAAATGGATCATTTCATGCATCTCCTCCCTGGAGCCTCATAACACACTTAGTAAAGTACCGCAGCCAAACCTCAATATATACATATATAATGGATATATGTATATACCATGTGAGCAATGCTGAAGTTATTTACTGCCACACGATGCAATGTGCATGCATGCCAAAGTCTTCAGATCTGGCCCTTCATCTTCACTGACTGGTGTTGGAGGTCCCTGCCATGTCCCGCCAGCACCACCCCGATGCTCTCCGCAGCTGGGTGCGCCGGCCTGCCTGCAGCAGTAGGAAAATGGTACGAGACAATTCCTTACCCTGGAGGCATTTCTGTGCAAGTTGGCAGTGCGGTGGAGCTGTGTGACGCTGGTAGGGGAGGAGAGGGAAGAGGGGTGGAGGAAGCAGCACCGAGACCTAGCGCCGGTTTGGTTAAGAGAAAGTCCTCTTCATTGCCTTTCCTGCTCGCATTAATAGACCGATGTTTGTGCCCATTAGGAAAGAGTCTTTTCAAGTGCAGCAGCTGTTTGTGGCCGTACGGAGCTGTTCTGTGTGCTATGCCTAAGCACGTCTTCCTGCACGTGAACAAATCTATTCGCTCCATCCAGCAGGACCTCCTTTTCCTCTGTGTAACCACAGTTCCTCTGGTCCTGTGTGCAGTAGTGTCCTCCTCACTGAGGCCGGAGCTGCAGCTCTGCTGGGGCACCGCGCTGCGCAGCGCTGCACGGCTGCGGCCCGGCACTGGGGGCAGGATGTATGTCCTCACAGCCGTACTGCTTGTAGCCCTCTGGCATCTTCTCTTTGTTTGGAAGGAGAGAGGAAAATGAGTTGATGGGACACTTAAGAAGCCACGTAGCGGATTCTGTCTGTGCACATGGAGATTTTGAGAAGCGTTCTGCTGCTTGGGGCGCTCCCAGCTCTGGAGCCAGGCCTGCCTGCCCAGCGGCTGCCAGGGGCTCCCAGCCGTGCTCCGTGCTGTGTTCTCCCGCAGCCCGGGGCGCTGCAGGGCTGGCCCAGGGGCACGGGAAGCAGGAGCACTTCACAAAATCGGGACAGAAACGAGGCCAGGGTGGGATTGGCATTTTAAATGATACGCTGAAAGCACCGAATTTTGTGTAGGCCAACAAAAAGGGCTATTTTCAATTACCGCACTGCATGACTGTGTAGATTTTAACTTCTGTTATTTCCTCAAAGACCAATAATATTACTAGTATTTGTCAGTAGTACTTAACACCGTGTTTTCCCAGTTTAAGTTGCTATTGTAGCACTTCAGTTGACTTTAACTTATAGTTACGATGTAAAATCCACCAACTCACAGCTGATGCTCACTTTTCCAGACTGTTATGTTCTATAGCAAAATACTGCGTCTCGGGGTGGGCTCCTGGCACGTGTTACTCATTGTTTACATTTTTTTACCCATAG
Seq C2 exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACACAGATGTAGACATTTTGTCATCAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010361:ENSGALT00000016870:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.094 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]