MmuINT0096300 @ mm10
Intron Retention
Gene
ENSMUSG00000027763 | Mbnl1
Description
muscleblind-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1928482]
Coordinates
chr3:60622146-60625198:+
Coord C1 exon
chr3:60622146-60622240
Coord A exon
chr3:60622241-60625123
Coord C2 exon
chr3:60625124-60625198
Length
2883 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
AACGATTTTTTATTTGCTAGATA
3' ss Score
5.91
Exon sequences
Seq C1 exon
TTCCCATGGTGCACGGTGCTACGCCAGCCACTGTGTCCGCAGCAACAACATCTGCCACAAGTGTTCCCTTCGCTGCAACAGCCACAGCCAACCAG
Seq A exon
GTTTGCTAATTTACAGCTTTGTTTCTTAAAACCAACTCTTAATAGGACCCAGTCCAACCGCTTTAACATTAGCACATGGAACTCCCATTCTGCTCAGTGGGAGCTGTGTATGGGAGAGCTGTAGAGGGTGCTTTCACGAGCATGGGTTTTCAAAGATACCTCTTGTTGGCCTACACATTCCCTTTATGACAATAGCAGATTCCTTTTATGCCATTTATAAGTGCTCCAAAGTTTTCGCAGCTCTGTTTCTGAAGCTACTAAACTGATATTTACACAAGCAATTCTCATTTTTCTTAACTAGTCTGTACTTTGGCCAACCAAAATAAAAGCAATTATGAGGTTATTCTTAAAGCATCTGATATATAGTTTTTTAGTTCTTTCCTAAATTTTTAATAAAAAAGAAAAAATATAAATGCATTTCTATGCCACAAATGACCACTCTTATAAATGGTTGTTTTTTACAATATAAATTTTGATAAGCAAATTGCTTACTAAAATTAATTACTTTTATATGCAACATCTTTCAGCTATGATTCTTGCTATTTTAAATGAAAAATGAAATTAAAGGATGTCATTTCTACAGTTAACCTGAATAAATGTTGGAGGTATTGAAAGTAAAAGAAATCATGTATGATAAATAACAGTTATTCTGTGCTCAGTTAAAATATGGAGGAAAGAAACATGCAGAATTCTTTTAAGCAGATAGGACCTACTTAAATTTAAATGATATGGACAAGAATGGGCTAGTTAAAGCAAAATGGTCATTTAAGGTATTTAAATTTTAGAATGCCATGACTCCCACCAGCATTTTCTGTACAAAAATATTTTCTAGCTCTGAACTAATTAAGCTCACATTTTAGAAGTAAATCTGCCCTTGAATATTCAGATATGTATGTTAGGATAGCACAGTTCACTAGGGTTGGTGATGTATGAAAGGCACTAAAGCAGGTTACACATGGCCCACTGACTGAGGTTAGACGGGGCCTCGGGAGAGTAAGGAGAAGCCTTGTCAGATGGACTCAGTGCAGCGCCCCTGGGACAAGTACACCAACTGTTATTACAATGAGGAACAGACACCTTCTCGTTTTTTTCAATATATCATCTTTTGATGAATTTTCAGCTATTAATATAGTCATTAATAAGTTTCAAGAATATAGTTCCAAATGGATTTAATTTTAAGTTCCAGACAAGCCTTAAATATTTCTTTGAAAAACATAATTAGTTTTTCAAACTTATCAAAATAGCCTTGGATTTATGCAAACACGTAAGACTCATCTATAAGGACAAGAGCGTGTGCATATGTGGCATGATAGTTGTTTTAAGTGGATTTGGTGGAGACAATTTATGGTGCAGGTAAACGATGCTGGAGGCTCGTGTGCATACCATATATGACTATAGAATTGCTGGTGTAAGCACAACTATAGCAAAGCAAATTCAACATGCCCTTGGCCACTTGGGTTGTAAGGGACACTTCTTGCATTGTGCTGTGACCATTTCATGCATAATTCTTGGGTCTTCATACTATTACTATTTTACAACCAAAGAAAAGGGAATGGATATATATATATACACACATATATTATATCTACATATACATACATATGTATATGCCTACAGTACATTAGCAATGCTGGAAATAGCTCATGCCACAAAATTCAGCCTGCATGCATGCAGAAGTTTATAGCTGGCCCTTCATCTGCATTGAGTGGTGTTGAAGGTCCTTGGTATGTTTCAACAGCCCCATCCTTGATGCTTCTACACTGTTGGGTGCAACATCCTGCCTGCAGCAGCAGGAACAATGGTATGAGAAGCTTCGTTATGCTCGGAGCACAGTTTTGTGCCATTTGCCATTGCTGTAAAACTGTGTAAAATGTCAGCGAAGAAACAACGGTTAAAAGGCACATAGTGAAACATCGTTTTTAGTAGATGGAGATAATCGAGGATATTTAAATTAAAACAATAGCAAAAACCTTCAGGAGCGTGAGTTCATTGCTACCCCAACAGACTTTCTGAAATGGAGTTAGTGCATTGGACAGAATAAGTTGAAATGCACTCACCAGTTGCTTTGCTTAGGGCCACACAACCAAAAACAAGTCAGTGTTGTTAGAACCAGTGTCCTCAGGCCTCGGCTACACTCAAGCTGTGGGGCTACCTCTCCCACTTACCAGTCTTTAATTGGAGCTTGAAAGAGAATCAAATCACAAATCCAATTTCCTGGCTCTTGTATATTGGAAAAAGTAACCTCTGTACCAGTTTCTTTTGTGTTTTTTTCTCCAGCTGTCTGATACTTACTTGCCTATTTAAATGCAGTGAAATGTGTAGTAGAAATGCTGAAGTCTGCTCAGGAGAAAACCTATTCTCTTTCCAAGTTATTTTTTAATTACTATTTTGTAATGTTTTCATTTGAGACAAAAGTTAAACACTTTGATCTGAATGAAATGTTAGAAACTTGCTTTCACAAAATTAGCCAAGGCATTTTTTACTCTTGATTTCAGTATTATTGCTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAGGGGTGTGTGCGTGCGCGCGCGTGTGTGTAGGCCAACAAAAAGGGCTTCTTTTAACAAAGGCTCTGCATGCAGTTTTGATAGCTGTACTTCTATTCCTTCCTAAGTACTGGTAACATTTGGAGACTAGTATTTAACATGGAGATTACAAGCAGTGATTTGCTTCTATGGCATTTACATTTTCGTTAACTTAATGTCATGTTGACCAGATGAGGGCTGTCACTTCACAGCTGAATCTCACTGTTTATATAAGTTTAATATTAAGATGTTCTCACCTCTTGGTGGTTGGCTTGCTTGCATGGATCATTCATTAAACGATTTTTTATTTGCTAG
Seq C2 exon
ATACCCATAATATCTGCCGAACATCTGACTAGCCACAAGTATGTTACCCAGATGTAGAGCTGTCGTCACAAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027763:ENSMUST00000099087:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.938 A=NA C2=0.308
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types