GgaINT0035658 @ galGal3
Intron Retention
Gene
ENSGALG00000004728 | Q5ZIY0_CHICK
Description
NA
Coordinates
chr8:8034196-8036746:+
Coord C1 exon
chr8:8034196-8034280
Coord A exon
chr8:8034281-8036656
Coord C2 exon
chr8:8036657-8036746
Length
2376 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GCCTTTCACATCCCTTACAGGAA
3' ss Score
10.69
Exon sequences
Seq C1 exon
GGACAGAATGCTGATGTTTGAAGAGCTGTCTGATATCTTCTCAGATCATGACAATTATTTGACAAGTAGGGAGCTGCTAATGAAG
Seq A exon
GTGAGAATTAGCTTGAGTTGCAAGGCTTCTAATCCCAATGAAAGCTGAAGTTAGCCCATTTTCCACCCAGCTGCCAAAACTCATCTCTTCCTAAGCTACTGCAGTGCTTCAGGGGAGAAACAGCCTATAGCTTGTAACACTTTTCTGCTAGGATGAGGTGATTTCATTGTTCATCTCTGAGCAGATCTGGAAAGGTTCAGGTTTTGCACTGATGAGTGGAAAGCAGCTCTTCTTGACTGGGTTGCACCACTGTGACTTCACTGGAACTGAGCTTCAGCTGAGGAATTAAACCAAGATGTTTATCCGACTGTCCTTACCTTCCTTGGAACTAGAAAACAGGGCTGGGAATCTCGAAGGAACAAGCTTCCTGCTCTGTGTGTGGCCAGATGGACAACAAAGCAGGCTCTGTCTGGAATAGTTGGACTGGTGTGCTCTCCTGGGCAAACCCCAGCAAGCTCAGCAGCTTGAATGGAGCGAGGAAGACTAGCAGAGAAGCTTATATTATGTAGCATCTGAGGAATGTGTCAGTGGCAATTTTTTGTTTTTATTTTTACATAAGAAGTTTCTCTAAACCAGCTAACTAGTTTACTCTTTGGCAGTTCTATTCAGTCTATCTGGCATTTGTACCTAGCCCTTAATATCTGAAACACTGTGTTTTCCTCCAGAGTGACTGGTGAGTGCATTCAGAACTGGCAGTCTGTTGTTTATCAGCCATTTACAGTCAGCCTGTAGCTCAGTTTTAAAGCAGGTGAGACAGTAATAAGCGTAGAGGAAAAATGTGTGTTTGGAATGGTTTGTTTGAACTAAATATTAAAAAGATGAAACAACCCAATCCAAGCCCAGACCTTTTGGCTCCCAGCACATCACTCTCTCCAGCTGCTGTAAGCAGATCTGCAAAACATTTTGAAAGCAGCGAGAGGAGAAAAATTCCATAGAATTAGCTAGAACCCCTCTCCTAGTTCTGGTGGGCTGATTTGGAATGATTGGAGGATTCGTGTACGCTGCATCCTTACAGCCTTTGCTTTGTGTCTCTATAAGCAGTCTCCCTGAGGAGGTCATGTTTGACCTTGTCTATCCATCCTGCAAATTTAAGTGCAGGGCAGACAAAACACCACACGAAACAGGTTGTCTGGCACAGAGAAGGGAGTGCTCTGTTCTCTCCTCCCCAAACAATGTCTCTGCTGTGAGCTGTAGCTGTAGCTTCTGGGCCTGCCTGTTGGCTGCTGCTACTTGAAGGGAGCATATAAACAGGAGGGGGAACAGCTGTTTACGAGGGTGGATAGTGATAGGACAAGGGGGTGTTAAACTGAGACAGGGGAGGTTTAGGTTGGATATTAGGAAGAAGTTTTTCACCCAGAGGGTGGTGACGCACTGGAACAGGCTGCCCAAGGAGGCTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGCGACCCTGTACATAGCAGGGGGTTGAAACTGGATGATCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGATTCTAGAGAATCTCATTCACCTTCCAGTATGAATTATCCAGGACATGGATAATTCTTTTCCATTGCTCCTGTTTTTCAAGTCAAGGAAGGAAATGCAGAGTTTAATCGATCTGTTCATTAAATGTGACTGAGAGAAGTAAATGCTGTAGCGAGAGGCTCTTTACAAGTGCAGGCTGTTGTTTTGTGCAAGGTTAAAAAGACACTGATGATTCATGCCACATCTATCTGGCCACTGGAAAAAATAACAGTAACTCCCAGCATCCCGTATGGATCTGGGAAAATAAAGGCTGCAGATGTATTGTGAAATAGCCCGTCCATTCATAGGAATTGTGGAGATCAAAACCTATTACTTCCATTTCCTGCGTGTTTTTGGATTAGTCAATAAGCCACAGAGGTTAGTTGGATCTCTGTGTTACAGCCTAAGAAAAACAGCAAAGCATTACGTAAGACAGAGATGTTTACTCATAGCAGTCCTCATCGGGAAATTGAGCAGAAATCTTGAGCTCAAGAGTGTCAGGATGGAGTTCAGAGCAGCACACAGACACCTAAATATACCTAAGCATCTCAGATTTAAACTCTCAGGAGATTTATGATAGTACTCAGCTTTGGCCAGAACAGCTATTTTGCAGAAAAATCCCCCTATGATCATCTGGTGGGACTCTGCCAAAGCTCCCAGTAGTGCACAGGACCCAGAAAAGCAGCACATGCATGTATACCCAAATCATTGTGCTAACCTAGCTTGCCTTCTTAAATATATTTGCAGTGATTTTACACAGACGTAGTTGGCAGCTTACCACTCACCTCCTCCACTGACTGCCTTTCACATCCCTTACAG
Seq C2 exon
GAAGGAACATCCAAATTTGCAAATCTGGACAGCAGTGTGAAAGAAAATCAGAAAAGAACACAGAGACGTCTTCAGCTTCAAAAGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004728:ENSGALT00000007530:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(12.7=100)
A:
NA
C2:
PF0061714=RasGEF=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]