RnoINT0126440 @ rn6
Intron Retention
Gene
ENSRNOG00000002347 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:RGD Symbol;Acc:1308947]
Coordinates
chr13:69932125-69936638:-
Coord C1 exon
chr13:69936554-69936638
Coord A exon
chr13:69932215-69936553
Coord C2 exon
chr13:69932125-69932214
Length
4339 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCTGTGCCCTGTTTCTTAGGAA
3' ss Score
9.64
Exon sequences
Seq C1 exon
GGACAGAATGCTGATGTTTGAAGAACTTTCAGAGATCTTCTCTGATCATAACAACCATCTCACCAGCCGGGAACTTCTCATGAAG
Seq A exon
GTGAGGATCCTGGGGAGCCCCTGGTAACAGAGCAGCTTGAAAGTTGCTTCAGCTCCTTCAGCCTCTGGGGAAGCAGAATTTTTATCTTGTACGTAATCTGGGAAACTTGGGAGTGAAATCAAAATCAAAGCCCAGTTGAGCTTTTCTCCTGCTTTTCCTCCTTCCCGCCCACACAACTGACATCAACACCTGGATTCCAATGTGTGTGTGTGTGTTTAACAAGCAGATACCCAGTGCTATAGGTTGTATGGATGAGAGGCCTTGGAGTATCCCTTCCTAGCAGTACAGTTCTTACAATGACAGAGGCCGACCTGCGAGTCCATGTCCTTTTTTGTTTTTCAGTCAGCAATGCTTATTGAGCACCAGATAAGGGGGGGGGGGAGCTCTTGAGCGTGTGGGGCAGAGGTAGCCTGACTCATTCTACTTCTCTAGAAATGTGTCGAGTGCCTAATGCTTATGAAAGATTGAACTTTTCTTTAGAAATATGAAGGTTGATAACAGCCTCTGTGTCTAGGAGTTCACTAATAGTTGATGATGATGGGCACTATATAATAATCACTTACACAATGACAAATAACTTCATGCACAATCAGTGGTCAGTTAAAGCAGGCCAGTTACCATCAGCACAGTTCTCTACCATCTACATTGGTCATCTTTATAGATAGCTAAGGCCCACAGGTAGATGTAGCCTACCTGTAATTCCCAAGGTCTGCACCTAACATCTAATAGAGCTGAATTGTGACTCCAACTTAAGGACCATCAAGGGCCCAGGCCTTGTTTTCCTAATGCCTAGTACAGTGCCTTGCATGAGCATACATCTAGAAGCCATTGTTTGACTGCATAGACTACTGGGCTTGCCATTCACATAACTGTCTTTTTCCTGCTCTGGGTCCTTCTAGGAGCAGCTGAGACAGAGTGGGTGGTTCATGCTGATGTCTGATGAACTGCACACTAACCAAGCATCCATTCCTGGGATTATGTTACTCCTTGTTTCACAGCTTTCTGGATGTGCAGACTTTAAATGGAAACCCATCTGGCTGGAAGGACATGGCTTAGTGACCTCCCAGTCTGCAGCACAGAGCTAGACTAACTGGAGCCGCACACTGAAGTCCCACTAGCCCTGAATCACCCTTCCAAAGGCAGATAAATTGAATTGTGTGCAGCTCAGTGCCTGGTGACAGTCTTCTGGCTGAAACCTTAGAGGCAAGGCTATATCTAGACATTAAAGATCTCATAAACCTTTCTGAAATGGAGACATCCACCTCAGTACTCTAAGTTAAATGTCATATAAGGCTCAAATCCCCATGAACTGAAGAACTTGGCGATGGATTGAGGTGACTGTACATTGTCACGGACGCTGGTTGGAATGCCTTGGGCGGTCTGTGTGTATGTGCAGATCCCTTCCCGTCATCTCTGTTGATCATTACTCATGTGAACTGTGTGGTTCTCAGTCTAACTTCTCAGCACAATTGTAAATAATGAGATCAAGGTACTTAAGTTCTCAAAATAAGCACTAAGGAAGACTCCTGGACCCTGTTTCTAGTGTGTTTCTCCTAGACTGATTTATAGTTGGGTAATCTTGGTTTAAAATGACCTATCTTCTACTTGTGGGTGAATGAAATGTGCTGCTTCTCTAGTACTATGGCCCAGACAACAGAATAATTAGCAAACATTTGTGGTTTTCCTTCTAACTGTTGAGAAAAGGTGTTTTTTTTTTTTTTTTTATTTCTTTTCGAAGTCTGTCTTAAATTTATTACATCCTCATAGTTTCTTAAACTTGGAATAATTATGAATCATTGAGTCTATAGATTTCAAAACAACAGGAAAGCAGAATACTACCAAAGTTTGGTTCTCGTACCTCTTGGTAGATGGCAGTCATCCCTGGTGACAGTACTATAAACAGTGTCCTGGCTCTGGTGGCAATGAGTGGGCAGTGGAGCTCCACAGCCTGTTCACGTCAAGGCTCACACCGTGAAGTGCCACCCAAACACTAGTGTCCAGTAGCTTTCAAGCCACAATTTAGCCATCATATCTTAAAATGGAGCCAGCACCCAGTAGACAGCCACCTGAGACCCAAGTCTCTGAGGCCCAGAGCAGCAGAAGGTGGCTGGATCCTGCCAAAGCAGAGATGAAGGAGAAGTGAGACCAAGGGAGAAGGGCAGAGGTGAGCACAGGAGGAACAGGGATGGATGTGAGAGGTCGGAGGAAGCACCGGGAGAAGTTGGAAATTCGTCAACACAGAGATGATTGAAGTCACTTCCAGTAATAAGTCTGTAGGAAAACAAAGTGACTTGGGAAGCAGGAAGAGGAAGCAGGAAAAGTAGCAAGGAGTGTGGCCAGCAAAGGAGGCAGGAGGAAAGGGCCAGAGAGTTGAATCGCAGGAGGCCACGAAAGCTCAGGAAAGCTCAGAGGGCACTGTGGTGGGGTAGCCCTGTAAAGAATTCTGGGCCAGCAGAGGAAATGAATGCTAATTTTGGGTGTGACAAGTGAATGGATTTTCAGTTGATACTCCATTGGGAAGAGCTAGCAACAGGCAGTCACATCTTTCTTTGTCCATTTCCTTTTCTTTGGACAGTGTTTTGAATTTATGGTGTACCCCAGGCTGGCCTTGAACTCATGATCCCCCTGCCTTGACTTCCCAAGTGTACAGATTACAGGAGTGCACTGTGCTTGGTTCACTTGTCAGCTTTGTGTGAGTGCTGCAGCCAGGGATGGAATCTCATTCTCATGAAACTACAGTCATGAAATCAACAAATCTTGCTCCTTGTCTCTGGTCTTTTACTCCCTGCTCATAGGATGGCATCTTTAGTGTTCCTTAAAATCCCTCTGTTGCTTTATGATCCTTAGGTTTTAATTTCTTATAAGTCCCTACTAAGAATTTTAGATAAGCCTGTTGTGGTGGAAACTCCATTTTTAGTCCCAGCACTTGGGAGGCAGAAGCAGGTGACTCTCTGTGTAGCCTGGTCTACATAGCAAGTTCTAGGCTAGCCAGAGCTACACTGTTAAGCTCTGTTTAAAAAAAAAAAGGAGAAGGAAGAGGAGGAAGAGGAAGAGGAGGAGGAGATGAGGAAGAGGAGAGAAGGAAGAGGAGAATTATTTTAGATAAATGCAAAATAGTTTCTAGCACTTTCCCTCTACCCATAATTGAGGTCTGGAAGAAGTTGTACACTAGGAAAATGTGGGTGCTTGCCTTCATGTCGGGCAGAATTGATTTTTCACTCCAAACTAAGTCTGAAATTATCTGGGAGCTCTTGAAACCACCTGGTGTGGGAAGTGACACATACTAGATGCCTGTCATGTGTCTCCAGGAAAACTGAGGGAATGTCACTAGATGATAGCTCTCTCTTATCTGTGATAGAGACCTCTGAGATGGACTCTGTCCTCAGGGCATGACCCAGCCAGGATCACAGCGGGTTACTGACCAAAGGTGTTTATACCTTAGCATCCATCATTAGTCATAAGCTGACACCCAGAAGGATTCCTTTTGCAATTGCACAGTGATGTAAGGTCATATGCTAAGGTCATGTGATAAACCCCGGAGAAACTGACTAAGGAAAAACTAATACAGAGGTTACACTGAGTTGTGAAATTGCCATCCATTCAAGCAGTTCCTGGAAAATGAGAACTTAACAAGACCCTGAAACCACAAAACTGAAACATTTTATGTTCAGTCAGCAAACCCATGATTAGTTGTACGTCGAAGTTGGGTTCTTGTTCCAGGCAGCAGGCAGGGAGCAGGGGTGGCCATCTATCCTCAGGCCTCAAGAGGAAGGGTAGACTTGTCTGAGTTCCAAACCAGGGCGGCATCAGGAGGGCTAAGGGAAACCCACAAATGGTTCACCTTTCATTAACCAAGATGTTCTCCAGCACTGGACCTCCTCGAGCCCTTGCCGTGTGACGGTTTCACTTACCTAAGTAGTACCACACAGTGCCCTTCCTTCAGAGAATGCTGGCACATTCATCCCAGGCCAAGATAAAGAAGTCATAAAATGTGCAGGAAGAAAGCTTCATTTTGAAAATATAAGATTACTTTGCATGAAAACCAAGATGTTCAAAAGAAAAATCTTCCATTTTGGGAATTGTTGACCTTCTGGTGATGGTTGGTTTTCTAGTCAGATTAAGGACTCTGCTTTTACAGAGTTGGCGGTGACTAGGATAACCCCAGACCACCACATGCAGAGTCTACAGCAGGGCCCCTAAGTACGGCCATAACAGGCTGCAGGAGGCCTGCCTGGCATTTTGGGACACAGGAAGAGATTGTATTTTAGAACCCAGATACCCCTTTCCTTCTCTCTAGATCGGTATCCTCCATGACCTTCCTCTGTGCCCTGTTTCTTAG
Seq C2 exon
GAAGGAACCTCAAAATTTGCAAACCTGGACAGCAGTGTGAAAGAAAACCAGAAGCGGACCCAGAGGCGCCTGCAGCTGCAGAAGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002347:ENSRNOT00000067135:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(12.6=100)
A:
NA
C2:
PF0061714=RasGEF=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]