MmuINT0134160 @ mm9
Intron Retention
Gene
ENSMUSG00000026482 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:MGI Symbol;Acc:MGI:107484]
Coordinates
chr1:154387067-154391565:-
Coord C1 exon
chr1:154391481-154391565
Coord A exon
chr1:154387157-154391480
Coord C2 exon
chr1:154387067-154387156
Length
4324 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTGTGCCCTGTTTCTTAGGAA
3' ss Score
9.64
Exon sequences
Seq C1 exon
GGACAGAATGCTGATGTTTGAAGAACTTTCAGATATCTTCTCTGATCACAATAACCATCTAACCAGTCGGGAGCTACTAATGAAG
Seq A exon
GTGAGCATCGTGGGCAGCCTGGCACCTGGGGAGAGTAGCTTGAAAGCTGCTTAAGTTCCTTCAGCCTCCAGGGAAGCAGAAGTTTTATCTTATACGTAATCTGCGAAACTTGGGAGTGAGAAAATTCAAAGCCCAGTTGAGGTTTTCTCCTTCAGCCTTTCCTCCTTCCCACCCACATAACGGACATCAAAGCCTGGGTTCAAATGTGTATGTGTTTAACAAGCAGATATTCAGTACCATTAGTTGCATGGATGAGAGGCCTTGGAGTATCCCTTCTTAGCAACACTTACAACTTAACAACTCTTACAATGACAGAGGCCAGCCTGTAAGTCCACATCTTTTTTTGGTACCACATTACACAATATTGTTTCAGTCAGCAATGTTTATTGAACACCAGATAAGTGGGGCCTCCTGAGCGTGTTGGGCAAAGGTATAGCCTGACTCATTCTACTTCTTTAGAAATGTGTTGAATGTCTAGGGTTTATAAAACATTGAACTTGTCTTTAGAAATATGAAGACTGAGAACAGCCTCTGTGTGTAGGAGTTCACTCATAGTTGATGACTGTGAGCACTATATAGTGATCACTCAATAATGACAAATAACTTTACACACAGTCATTGGTCAGTTAATACAGGCCAGTCATTATCATCACAGTTTCCTACCATCTACGTTTGTCATCTTTATTGTGTAGATAGCTAAGGTCCATAGGTAGATGTAGCATGCCTGCCATTCCTAAGATTCACACCTGACATACAGTATTGCTGAATTGTGACTCTACCTTGGGGACATTCAAAGGCCCATGCCTTGTCCCAATACCTGCTACAGTGCCTTGCATGATGATCTATACATCCAGAAACCATTGTTTGACTGCATGGACTAAGGGGCTTGTCATTCACATATCTCTGTCTTTTTCCTGTCCTGGTTCCTTCTAGGAGCAGCTGATAATAGAGTGGGCAGTATATGCTGATGTGTGATGAACTGCACACTAACCAAACAATTCCTGGGATTATGTTACTCCTTGTTTCACATCTTTCTGGATTTGCAGACTTTAAATGGAAACCCATCTGGCTGGAAGGACATGGCTTAGTGGCCTCCCAGTCTGCAACACAGAGCTAGACTAACTGGAGCCACACACTGAAATCCCAATAGCCCTGAATCATCCTTCCAAAGGCAGATAAATTGAATTGTATGCAGCTCATTGCCTGGTGACAGTCTTCTGGCTGAAACCTTAGAGGCAAGGCTATATGTAGACATTAAAGATCCCATAAACCTTTCTCAAATGGAGACATCCACCTCAGTGCTCTAAGTTAAATGTCATATAAGGCTCAAATATCCCAACGAAGTGAAAACCTTGGCGATGAGCTGAGGTGGCCTGCACACTGTCATGAGTGTTGGTGGAATGCTTCGGCGCTCTGTGTATTTATGCAGATCCCTTTCCCATCATCTCTGTTGATCGTTATTCATGAGAACTGTATAGTTCTGGGTGGAAGTTCTCAGCACAGTTGTAAATAATGAGATCAAGGTACTTAAGTTCTCAAAGTAAGCACTAAGAAAAACTACTGGGCCCTGTTCCGAGTGTGTTACTCCTAGACTGATTTATAGTTGGGCAACCTTGTTTTAAAGCGACCTGTCTTCTACTTGTGGGTGAATAGAATGTACCACTTCTCTATACTATGGCCCAGACAGCAGAATAATTAGCAAAGATTTGTGGGCTTCCTTTTAACTGTTAAGAAAGATTTTTTTTTAATTTCTCTTCAAAGTCTGTCTTAAATTTATTATAACCTTGTGATTTCTGAAACTTGGATTAATTACAAATCATTGAATCTATAGATTTCAAAACAACAGGAAAGCAGAATACCACCAAATATTGGTTCTTGTACCTCTTGCTAGATGACAGTTATTCCTGGTTGCAATAATATAAACAATGTCTAAACACCTGCAAGAGTCTGACTCTGGTGGAAATGAATGGTCAGTGAAGCTCGACAGCATGTTAATATCAAGGTTGGAGCAAGACGCCATTCACACTGTGAAGACCCATCCAAACATAACTTTCCAGTAGCTTCCGAGCTGCAACGTAACCATCATGTCTTCAAATGGAGCCAGCACCCAGCAGACAGTCATCTGAGACCTAGGATAAGTCTCCGAGGCACAGGAACAACAGAAGGCAGCTGGATTCTGCAAAAGCAGAGATGAAGGAAAAGCGAGACAAGGGGAGAAAGCTGCCTAGGGAAAGGCTGGAGGTTGGAGCTCAGGAGGAGCAGGTCCATGTGAGAGGTTTGAGGAAGCACGGGGAGATGACTGAAGTCACTTCCAGGGAGAAGTCTGTGGGAAAACAAGATGACTTGGGAAGCAGGAAGAGGAAGCAGGAAAAGTAGCCAGGAGTGTGAGCAGCAAAGGAGGAAGGAGCAGCAGAAGCCTGGGACAGCTCAGGGCTGCTGGGGTGCGGTGGCAATGTGAAGAGTTTCAGGCCAGCAGAGGAAATAAATGCGAATTTTGGATCTGACAAGTGACTGGATTTCTGGCTGACATCCATTGGGAAAAGCTAGCAGCGAGCAGTCACCTCTTCTTTCTTTGTCCTTTCTCTTGTCTTTGGACAGCATTTTACTGTGTGGGTAACCTTGACTTCATGGTGTTTCCCAGGCTGGCCTGGGACTCATGATCCCCCTGCCTTGACCTCCCAAGTGCTGAGATTATAGGGATGCGCTGTGCATGGCTGACCTGTCAGTTTTGTGTGAGTCCTGCAGCCAGGGATGCAATCTCATTTTTCTGACACTACAATCATGAAATCAGCAAATCTTGCTCCTTGTCTCTGGTCTTTCACTCCCCTGCTCATAGGACGGAGCGAGGCTTCAGTGCTCCTTAAGATGCCTGAGTTGCTTTATGATTCTTAGGTTTTAACTTTTTTGAAGTCCCTACTAAGAGTTTTAGATAAGCCTGGCATGGTGGACACCACCTTTAGTCCCAGCACTTGGGAGGCAGAGGCATGTGACTCTCTGTGTAGCCTGGTCTGTATAGTAAGTTCTAGGCTAGCCAGAGATACACTGTTAAACTCTGTAAAAAAAGAAAGAAGAAGGAGAAGATGAAGAGGAGGTAGAGGTAGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGTTCTTAAAAGAACTAAAGATAAATCTAAAGATAAATCCAAAATAGTTTCTAGCACTTTCCCTCTACCCATAATTGCGGTTCTGGAAGAAGTATACATTAGGAAGAGATGGGTGCTTGTCTTCATGTCAGACAGAGTTGATTTTTCACTCCAAACTAAATCCCGAGGATCTGGGAGCTCTTGCAGCTACCTGGTATGTGAAGTGGCACATCCTAGATTCCTGTCATGTGTCCCCAAGAAAACTGTGCTCTCTCTTATCATCTGTGGTAGAGACTTCTGAGATGGACTCTGTCCCCAGTGGCATGCACAGCCAGGATCCCAGCTGGTTACTGACAGAATGCATTTTTGCCCTGCCATCATTATTTCAGGCACCCAGAAGGATTCCTTTTGTAATTGTATGGTGATGTAAGGTCACATGCTAAGGTCATGTGATAAAGCCTGGAGAAACTGACTAAGGAAAAAATAACATAGAGGTTACACTGAATTGTGAAATTGCCATCCATTCAAGCAGTTCCTGGAAAATGAGAACTAAACAAGACCCTGAAACCACAAAACTGAAACATTTTATGTTCAGTCAGCAAACCCATGATTAGTTGTTACCTTGAAGCTGGGTTCTTGTTCCAGGCAGCAGGCAGGGAGCATGGGTGGCCCTCTGTCCTCAGGCCTTAAGAAGAAGGGTAGACTTGTCAGAGTTCCAAACTAGAGAGGCATCTAAGGAGGACTAAGGGAAACCCACAAATGGCTCACCTTTCACTAATCAAGATGTACTCCGACCCTGGACTTCCTCAAGATCTTGCTGTGTAAAGATTTCATTTAGCTAAGTAGCGCCTTTCCTTCACAGAATGCTGGCACACTCATTCCAGGCCACGATAACAAGTCATAAAATGTGCAAGAGGAAAGCTTCATTTTTAAGATATAACATTACTTTGTGTGAAACTCGAGATGTACAAAAAAAAAAAAAAAAAACCCATCTTCCATTTTGGGAGTTGCTGATCTTATGGTGATGGTTGATTTTCTAGTCAAATTAGGGACTCTGCCTTTACAGAGCCGGGGCGGTGTGGGGGGCTAGGCCTGAGGGCCTACAGGCATGGCATCTTGGGAATACTGGAAGAGATTGTATCAGAGAACGCAGATAACCCTTTCCTTCTCTCTAGACTGGCATCCTCCATGACCTTCCTCTGTGCCCTGTTTCTTAG
Seq C2 exon
GAAGGAACTTCAAAATTTGCAAACCTGGACAGCAGCGTGAAAGAAAACCAGAAGCGGACCCAGAGGCGCCTGCAACTGCAGAAGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026482-Rgl1:NM_016846:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.267
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(12.6=100)
A:
NA
C2:
PF0061714=RasGEF=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: