GgaINT0036067 @ galGal3
Intron Retention
Gene
ENSGALG00000004587 | RC3H1
Description
NA
Coordinates
chr8:7676372-7679988:+
Coord C1 exon
chr8:7676372-7676484
Coord A exon
chr8:7676485-7679706
Coord C2 exon
chr8:7679707-7679988
Length
3222 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGTAACTCCTTATTTCAAAGATT
3' ss Score
6.64
Exon sequences
Seq C1 exon
CCTCCTCAGCACAGCAAATACAAGACGTACATGTGCCGAGACATGAAACAGAGAGGAGGATGCCCCCGAGGGGCCAGCTGCACCTTTGCACATTCACAGGAGGAGCTAGAGAA
Seq A exon
GTAAGTGTACAGATCAGTCCAATAGTTGCTTCACCTTATCCTTAGTTCTCCATCATATCTAGGAACGGGGAGACGAAGCTTAACTTGTCTATTACACCAGCCAGAAATAACTCAAAAATTTTACAGCAGTTATCTGTAAAGTTTTGGAGCCATTCGTTCTTGAACACAGAATGTTTTGCTTTGTTCAGCAGCAGTGCAGCTCTGAAACTTTGCTATTTGCACAAGAAGCATTACTTGAGATTTTGGGGATAAGCTTTATATTTATTTTGTCTTTCTTTATTACTTCTTCAGTGTGGATGAATAGACTAGATTGCATCCACTGTGGTTACTTCTTCATGTGTGTTTCTCAACCTGGCTTTATAGCTGAGTATGAAATGTAGATTGATACTGGCACATTCCCAGATCTAGGGTTCCATTGTCCTTCTGTGCTGCTTTTGCTATTCAGAAGGCTAAAAACCACAATACTGTGCATTTTCGTTCTTCAGCAGTTATCCTGTACCGTTTGGCTGGTAGTGTTTTGCATGTGCAATAGCCTGAAGGTGGTTGAATTTATTGCTGAGGAATAACAAAGAGGTGGGCATAGAAAGTTTGCAGAAAATAAGCTAACTGGATTACAGATCCTAGAGGGTTATCTGAGAGCAAGCTGCTCTGTTTTGAAGGTTATTTATGTTTTTTCTTTCTCTGAAAAAAAAAAAGATGTATTGAGAGTTGAAAGAAAAAACTGTGTGTAACTTGACCTGTGGTTTTGGGGCTAAAATTACTCAGTTTCAAAGCAGAATGCTTGTTTTCTGCAGTCAGGAGACAACTCCAGAGATCTGGAAATGGTATGTAGTCTGCTTTTTCTTTAAACATCTGAAGCTTCAAGTACTGATACAGCAGTTCGTTAGCTATACAGCAAGCAATACGTAGGCAAAAAGAAATAAAAAGAGGAGAGCACGTGGTGTTAGAATGATGAAGGCTGTTTTTCAGTCTAACAGAGAATGGGACTTCGGTATTTTTTTTTTTTTTGCAGAAACAGTTGGATTTTTTTCCCCTTTTGTCATAATATTAAGAAAATGAAGATGGTAGTACTATATTGAATAATATAGTACAACTGGGTGTATAGTGTATAGTACCAACAAGGGTGGTGAGTCAGTATTAGCACTTCCAAACTAGCAGTGTATATCAAGGACAGTTTGTCAGGTTTGCAGGTGGAGGAGGCCTATTTTATCCAGACTGGATTGTTTGCTTTAGTGATAATGTCCTGGGGCAAGTGAGGTGAGTGCTCTGTGTCGGTTGCAGCAGTTTTTGTAGGCAGTTGGAGAACTTTGAGTTCTGATTCCTCCTTCTGCCTTTTATCTCCGTTTAATTCCTTTTAGTAGATTCTGCATTAATTGTTCTCATTTTAGAAATATTTAATATGAATAATACGCGTGGCAGAATCCCTGAAATAAACTTTTTTGGGGAAGGAAATTGTTGCTACATAATTTTTACATACCTTGTATAGCTTTAATTTTACAAGGCAGGTTTATAGGGAAGTATGTGATGATGCCTTGGATGGCAAATTACAATCTTGTGCTGCTTAAATAACAGCTGATTCCCCTTTTTGGGTGTGACAAAGACAAGTCTGCATAGGTGATTCTTGGTGGGGGGTGTTCTTGTTTCTGTTGTTGTTGTTCGTTTGAGACAATTTTTGTCCTGCATGTGTGGAGACTACAACATTCTTTTTTTGAAGAGGAATCCAGAGGGATTCTTCTTTGTGTTTTGTGTTTCCTTGTAAGCATTTTATTATGGTATATATTGTACAAGTGCTTCCTGTCACTTCTGACCTGAATGTGTGTTTGTATTTGTGTGTCTGCCTCTTGAGCATACTGTTGTGCTCTAGATGAATGAGCAGGGATTATGAGCTGTCTTCCTCTTGTAAGTTACATGCAGACCTTCAAAAGGTCAGGAGCTAGGAGGCACTGCACCTCTAAAAGACCTAATGTGAACGAGATGACCAGGAGTTATTGACAGGCAGAACATGGCGTGCTGCTGCTTTGCAAGGAAAACCAGTTTAGCCTTGAGTGGGATGGCCAAGTAAAGTGATACACTCAGTCTTGGGAGTTCACTTCAGCTCACCTCCATGTTTCCAGCTGGCAGGAAATGCCAGAATGACTTCTGAGCAGCATGTGTTCAGCTGTCTGTCCCTCCTTTGGGTCCTTGTAGCGTGATAATATGTTTGTTTATTCCTTTTAATATGTTCTGAACGATGCCTGCTGTCATTACCACGTAGCTTGGATTTAAAGTGCTATTGTGTTTGTGTTATCATCTCACTTTGCTTGGAAGCATTTGCTTCAGCCAATCCAACCCCTGTGAAGGCTTCCCACATAGGAAACAGTCTCTTTTTCTGTGAGCACTCAGGCTAGCAGATGTGCCCTCCCACTTGTGTTCTTGTGTCTAAAAGCTAATGGCAGGAGGTTTAGTGGAGGACCTTCAACTCTGGAATTTGCTCTCTTTGTTAGTCCAATACCATCAGTCTGCTGGTGTTTTTTTGTCAGTGTTAAAGGATTCTTGTTTGTTCAGGCTTACCAGAAGCAGATAGATTTTGATATTTTACTGTGTTTAGAGATTTTTCTCTCTGAAATCACTTCATTTATCAAACCACACAAGTGATAAAAGCTGTATATTGCTATAATAACATAGATCTTGATATACCATGCTTTAGAAAGATGATACAATTTGGCACTAAGGACTTACGTTGGCTTACTGTTGGGGACAAATGGTCTAAAAGAGAACCTGATTTTCTTCTATCATTCCTTTAGTTGTCTGCTGTTAGTTTATTCTCTAAAGTAAACTACAATAGTCTGTGATTCTTGTTTTGAAACTTCCGTTGTTACAGGTAGTATTTTATGTGGTGTTTGTTTTTTGGTTGTTTTTCTTCATTACAGTTGTAACGGATATATGTGCAGGAGGTAAGATTTCAGATTTTCTGAGCTCTGAATGCTTGGTGTACTTGTCATGAAAAATCCATCCTTAGTGTGACCGATACCGGTTCGTTTGATTGAAATTGATATGAACATGTCAAATTGCAGTGAAATTCTGGTCTTCCAGGTATTAATAATAAATCTCTCAAGCCATTAGGAAGTACAAATTAGAACTTGAAGCTTTGGGTACCACCTGTGTTTGGTGGAAAAAAAATAATCTTGAAAATCCTTTCAGTATTTTGTTTCAGTTTTTGACGTGTAACTCCTTATTTCAAAG
Seq C2 exon
ATTTCGTAAAATGAACAAGCGTCTGGTTCCAAGAAGACCTCTGAGTGCCTCCCTGGGCCAGCTGAATGAGGTGGGCCTGCCTTCAGGAGCTATCCTCTCGGATGAAGGGGGAGTGGACTTGCCCAATAGGAAAACTTCTGCTCTGCCAAACGGAATTGTGTCAACAGGCAGCACAGTGACGCAACTCATTCCTCGAGGGACTGAGTCCGGTTATGAAACTGCTCTGAAGCCAGGGAAGATGGACCATCTGAGTAGCAGTGCCCCTGGATCCCCTCCTGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587:ENSGALT00000039453:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=NA C2=0.930
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=71.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]