HsaINT0138825 @ hg38
Intron Retention
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr1:173964839-173970617:-
Coord C1 exon
chr1:173970505-173970617
Coord A exon
chr1:173965121-173970504
Coord C2 exon
chr1:173964839-173965120
Length
5384 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TGCCTATGCTTTTTATATAGATT
3' ss Score
7.35
Exon sequences
Seq C1 exon
CCTCCACAGCATAGCAAATACAAAACATACATGTGTCGAGATATGAAGCAGAGAGGAGGATGCCCTCGTGGGGCCAGCTGTACATTTGCACACTCACAGGAGGAACTGGAAAA
Seq A exon
GTAAGTGTGAAAGTCAGGAGACTTTGGAATAAGGTGTAAGTGGAATAATTCGCTGACATACAGAAATACAGAAAGAGTAGCTGCTTTATCTTAAATGAATAGGACATTTTTAGAATGTAACACAGCTTGAACATTCCTATTCTGAAAATCTGAAATGCTTCAAAATCCAAAAATGCTTGAAAGCCAACTTGACACCACAAGTTGAAAATTCCACACTTGACCTTGTGATGGATAGCAGTCAAAACTTCATGCACAAAATTATTTAAAATAATGTATAAAATTACTTTCAGACTATGTGTAAAAGATGTATATGAAATATAAATGAATTTCATGTTATATATTTGGGTCTTATCCCCAAGACATCTCCTTATGTATATGCAAATATTCCAAAATCCAAGACAAATCCAAATCTTGAAACACTTCTGGTCTCAAGCATTTCGGGTAAGAGATATTCAACCTGTACATAATTTTTAAAAATGAAAAGCAGTTTCTTCAGCTTTTATTGCATCATGCCTATAGATAGGAAACTATTTTATGATTAGCTAAATCTAAAAGTGGGTCATTTTCACTACAAAAAAAATTAAAATTATAATAATTTTAATCAATTTTAACTTAATTTAACTAATTGCATGATGTATTTCCAGTGGAAAATTTTGCCCTTGGCTCAGTTTAACAGATTCTTTTAAACTTCAAGGACAAGATAATTTCAGGGATGTTAAATTTTTCAGCTCATTGAAGAAAGAAAGGAAAAACCTCTTAATTTTTTTTATTTTTATTTTATTTTATTTTATTTTTTAAAAATAGAGACAGGGTCTCCCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTTAAGGGAGCCTCCTGCCTTGGCCTCCCAAAGTGCTAGGATTACAGGCAGGAGCCACCACACCCACCGCCTCTTAATTTATTTATAAATCCAATGTAACACTTTCATTAAATTTGACAAAGATAACACAATTAAAACTGCAAATCTACTGCAAGTATTAATATTAAAAATCTCAAAAATTTAAATATAATTCAGTAATACATTACAATAGATGCCATGTCTAAGGGCATAACACCCTGAATCCACCTGAGCTCATCTGATCTCGGAAGCTAAGCATGGTCAGGCCCAGTTAGTACTTGGATGGGAGACTACCTGGGAATATTGGGTGCTGTAGGTTTTTTTTTTTAATATAAATAATATAATTTTTTTTTAAAGAAAAGAAAATAGATGCCATGACTCTGCAAAAGTAGTACAATATAATTATCACAACTTAGAAAATAACATGATAATATCCAAAAAATGCCAAAGGCCTTTGAATAAAATTGAATGTCAATTAAAAATCAAATTCCAGCCAGGCGCCGGTGGCTCCCAGCACTTTGGGAGGCTGAAGCGGGCGGATCACAAGGTCAAGAGATTGAGACCATCCTGGCCAACATTGTGAAACCCCGTCTCTACTAAAAACACAAAAATTAGCTGGGTGTGGTGGCATGCGCCTGTAGACCAAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCACCGTAGCACTCCAGCCTGAACGACAGTGCGAGACTCTGTCTCCAAAAAAAAAAAAAAAAAAATCAAAATTCCTTAATACAACAGAAATGCCATACTTTCTCAGCATGGTAATAAATTATATTATAAATCAGAAGCCAACATAATAGTATGATGCTTAATTAGTAAAATATTCGATTCACTCTCATTAAAGTCAAGGATAAAGCAAAATTTTCTGCTAGTAATTAGTAGTAAAATTTTCTACCACTGTTATTTAACATTGTGGAAGTAGTAGCTAATGTATGTAAGAAAGAATAACATAGCCATAAAATTATTGGGAAAAACTTTAGTACTAGAAACAAAAGAAATGAGAATTTAGTAAGATGGCAAATTTTAAAAATCACAAACATGAATTGCCCTCGTGTAAACTAAAAAGAGAAACATAACCAGTTTAAAAATAAGTTAAAATTAAGGATCTCTTCCAGGGTGTATATAAATTGAACCAATAAATTACCTAGGAACATAAGAGAAATATTGAGTAAATATACTGTGTTCTTGGATAAGGTTTGATGCTATAAAAGTTTCATTTTCCCATAAACAACAAATTCCAAGAAATCCGAATTTAAATCTCACCATGATGATGTTAAGATCCTATCAAAAATTCATTTGTAAAGAATAAATAGGTACAAATAGCAAGGAAAATTCTGAAAATTCTGGAAGTTTTAGACAGGAACTAGACTAATAACTATTTACCTGTATTATGGACTACAGTGAATAAAAGACTTTAGTCTTTTGCGTAGGAATAGATAGATTAATGAAATGCAATAGAGAATCTAGGAGGAGTTTGAGATGCATATAGGAGCTTAGCATATGTGCTAAAGGTGGCATTTCACATCAGTGACCAAATGAATGATGGAAAATAACTGTCACCTATTTGAAAAATAGAGCTGGATTCTTACCACAATCTTTATACTAAAATGAACTCTAGATGTATAAGAGATTTAAATATTTAGGAAGGCAAGAAACCACAGAGTAGTTAAGAGGATTTTTGTTTGTTTGTTTTTAGTTGTTAAATAAGGAAAGAAGGAAAAGATTTTTTTAAGAACTGCAACCCAGCATCCATAAAGGAAAAGATTGATAAATTTGATTACATAAAAATTATAAAACTAAGATATGGTACAAATACAGTTTTTTATAAAAAGCTTGGTGAGGAAATGACACACAGAGGGCTGATATCCTAACATAAAATGAGCTCTTACAAGTCTGTAGGAAGGAGAGGAACCAATAGATTTATGGATCATAAACATAGTTTACGGAAGAAATACTAATGGCCAATTATCCTGTGAAACTATGTTCAATCTCACTAGTTGTTAAAGAAATGCAAATTAAAGCAACTTAGTATTTTTGGACTACCAAATTAACAAGACCAGTGCTACCCAGTATTTGATGAGGTTTTGAAAGACGTTTTTCTTCATGATCAGTAGGACTTAAAATAGTTTTAGAGAGCAGTATGACATAAAAATTTCTAATTTGCGTGCTCTTTGACCTCATTCTGCCTTTGCTTATTTGGTTATTCACACAGGGTGCAAGTACATGTTCATAATTATCTGTTACTTTTTTTTTGAGACAGGGTCTTACTCTGTCTCCCAGGCTGGAGTGCAGTGATGCAATCATGGCCCACTGCAGCCTCGACTTCCAGGCTCCAATGATCCTCTCACCTCAGCCTCCCGAGAAGCTGGGACCACAGGTGCATGCCACCATGCCCAGCTAATTTTTGTATTTTTGGTAGAGACAGTTTTCCCATGTTTCCCAGGCTGTTCTTGAATACCTGAGCTCAAGTGAATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATTGTGCCCAGCACATTATTTTAATAGCCAAAAAAAACCCAACCAGCCTAAAATGAACTGACATAAAGGGATGTCTAAGATTATTAAGTGGAGGGAAAAATTAGCAGTAATATATGACTCAACTGCTGCAAATAATAATCTTATATGAATATAAAGCTAATGTATAAAGGAACAATTCCATATAATGATACACTAGACTTTCAACAATAATTACCCCTGAGGGGTAGTTTTCTCCCCAACCTCAGAAATTTGTCAGTTTTGGGAAACGTGGAAAAATAGCATTATTACTCTGATGGGGTTTTATTTATTTTTTTATTTACTTTTTTTTTTTGTTTTTTGAGACAGGGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCGCCTCCCGGGCTCAAGCAATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATATTGGTCAGGCTGGTCTTGACTCCTGACCTCAGGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACCGCGCCAAGCCGAGGTTTTATTTTTCAAAATAAAAATGCATTAGCAGTTGTAAATGGACTTGCTTTCATTGTTGAGGAACAAAGATCCTGGAGTCTGATGGCTTATATTTTTTCCTTTGGTTAGATTTCAGAATCGATGTGCTTGTTGTACCACAGCATCTCTTTAAACCCAGGCAATTATTCTGTATTGGTTCCATTAACCTACTTTTAAAATAACTTTAATTTTGTATTGGCATACATAACATCAGCATCTCTGAAGCAGTTCTAATAAAAGTCACTATCCTTAATTGCTTAAATTTTTTTTTGAAACAGGGTCTCACTGTGTTGCCCAGGCTGGAGTACAGTGGTGCAATCTTGGCTCACTGCAACCTCTGCCTCAGGCTCAAGTGATCCTCCCGCCTCAACCTCCCGAGTAGCTGGGACCACAGGCATGCACCACCACACCCGGTTAAGTTTTTATATTTTTGGTAAAGACAAGGTTTCACCATGTTGCTCAGGCTAGTCTCAAACTCCTGAGCTCAAGTGATTCGCCCGCTTCAGCCTCCCAGAGTGCTGGGATTACTGGTGTGAGCCACAGTGCCTGGCTGCTTAAATTTTTTAACAGAGTAAATGACAAATGTTTCACAGTGCATACTGGCTTTGTTTTTCTTTTATTCCTAATTTTTTAACATTGGCTCATTGTATCCCAAGGCATTTGAGGGAGAGCTGAAGTAAAATATTTCAGAAACTATCTTCTAAAGATTTTTCTACTAGCTTCTCCAATAAGTTTTAGAAATACAAATGTCCACAGAAATATATTATAGCAAAAATATTAATAGCATAATTTATAATATGACAAATGTTACTCTTTTTTTTGAGACAGAATCTCGCTCTGTCGCCAGGCTGGAGTTCAGTGGTGTGATCTCGGCTCACTGCAACCGCTGTCTCCCAGGCTCAAGTGATTCTCCTGCCTTAGTCTCCCTAGTAGTTGGGACCACAGGCACACGCCACCACACCCAGCTAATTTTTGTATTTTTATTAGAGACGGAGCTTCACCATGTTGGCCAGACTGGTCTCGATCTTAACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACAGCACCCGGCCTATGTTACACATTTTTATGAGGAATTTTATACTTAATATGTCTTGCTGCTAGAGATTTTATGCAAAATATACACACTGATAGAGTTAATGTTTCAAGAGAGAATATTTCTAGAAAATAATATTAAGTACATTTTAGTTCTTGGTTTTGCTTTTATATTTGCTTTTTGATATGTGCCTATGCTTTTTATATAG
Seq C2 exon
ATTTCGTAAAATGAATAAGCGCCTGGTTCCGAGAAGACCCTTGAGTGCCTCTTTGGGTCAACTTAATGAGGTGGGCCTGCCTTCAGCAGCTATCCTTCCAGATGAAGGTGCAGTGGATCTCCCTAGCAGAAAACCTCCTGCTCTGCCAAATGGAATTGTATCAACAGGGAATACAGTAACACAGCTTATTCCGCGAGGGACAGACCCCAGCTATGATTCTAGTCTGAAACCAGGAAAAATAGATCATCTGAGCAGTAGTGCTCCTGGATCCCCTCCTGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870:ENST00000367694:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.926
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=71.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development