GgaINT0036555 @ galGal3
Intron Retention
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19687171-19689279:+
Coord C1 exon
chr8:19687171-19687224
Coord A exon
chr8:19687225-19689216
Coord C2 exon
chr8:19689217-19689279
Length
1992 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CTTCATATCTTGTTCAACAGAAC
3' ss Score
7.66
Exon sequences
Seq C1 exon
GGCAGTTGTCAGGACTGTAAAGTCAGAGGACCCAACCTTTGGGCATGCTTGGAG
Seq A exon
GTAAGTGTCTCAACTGTAATCTTCTGGAAGACTACAGATAAAAGTTGGTAGTGTTTGTTGTTGTTGTTGGAAGGAACAACTATTGAAGTTCTTTTTCCTGTAACTTAATGTGTTTGACATGAGATTTTTTTTTATAAGAAGCCAGCATATTAGGGTTTCTTTCTGTTTTATAGCTTAAAAAAAAAAAAAGTAAATCTCTCCGTCATGTCTGTAAATCCTAAGATGATATATTGTTCCTGAGTAAACTTAAGCTGCTTTTTCTAACCTTCTCTTACAGTTTTTAATAACGTCTAGCAGTAAATGCTGGCTTCTTAAGACTATCAAAACAGATACTCTGAATTTTGATTCTTAAAAATAAATAACTTTCCCTCTTTTTTTAAACATGTAGAAACATTCTTCAAACTTATCTGAATTTTGTACTGTATTTACACTATATATAGTTCTATCTAAAATATGTTATCTTATTCTTCTTTCTGTCTGCAAAAAGAAAAAAAAAACAAATTTTAGCGTGTTTAAAAAAAAAAAAGTCTGAAGCTGTTACTTCTGATCCATACCACAGGAAATTCTGATTTAGTTTTTAAAACGTCTTCTGAGCCCTTAAAGCCTAGAGCTGTTTCCAGAGTTTGATATGTTTGATATTTTACTCTAAAGGCTTGGCTTCATTTCTTGACAGCATTTGTTTAAGCCCTGTTAGGAAGACTTCTAGGCTGAGATGGAAGCCTATAGGTGTATGTATGAATACTTTTAAAAATCTACATAATTATTTACCTTTTAAACGTATTGGAACAGCGAAAAGATCAGATTTTGTTCCTTCTATCAATAGAAGATAGGCAGGGGAAAGCAGCCACATTTAATGTCTTTTTCTTAGATTATTTGAAGTTTAATTACATATAAAAATCCTCTTGGCGATAGCAAGACAGGTAGGAAGAGGTGTTGAGGGATGCATGAACCTGACAGGTGGGGAAATGCTGTGAAGCTTAAAGCTTGTTTTTTATTTCTCACTTAGAACTCTTGGACTCTTATTGAAAAACTTAATTTCATACCAACAGTTCCAGTTCAATTTTCTGATTACAGTAGTACATTTAAGTTTCATGCTGTGATACATCTCCTCTTGGATGAATTAACATCTTGTCTTCACCTTTTGTGCATAGAAAAACAGCCAGCACATGGTGAGATCCCAGCATGTTAACTATCTGTAACCTAACCAACACCTGTGATTATTTAATATAGAAATTTGACTGTGTCCAGCTGCAATTTGATTGCATAAATTAACATGCTTAGAGCACTATACAGATAACGTGCTGTACCCTCAGGATTGTCTTGACTCATGCAAATGAGGAATTAATGAAAACTGCTTGAAGATTGACAACTGCGAGATTTCATATTCAACTCAGCCAAATATGTTTTGCAATTAGCACAACTAAACTCAACAATTAAAGTCAAAAACAGCTTTAGATCTTTTAACTTAAATGTAGTGAGTGCCTAACCATATAGTGCCAGAAACCTTTATTTAAAGATAAAGATCAATGAATAGTAAGAAAATTCTATGATGAATAGGCCTTATATAAGGGTATAAAGGCATTTTTATATGAGCATGTCATGCTTCTAGTCTGTTGTAATTCAGTGTTTGACACTGAGCTAACTTAATGTTTTCTGTCACAGTGTCTATCAAATCATGAGTTGTAAAAACATATTTTGATTTTAATCTGAACTATTATATCAAATTGGCAAAATATATATATATTCTAAAAATACTAAATGTCTAACGCTCTCCACCAGTGTAAGGAGTTGAGTTAAATCTTGCAGCATTCTTACTTAGCTTTAGGTAATATTTATTTTAACACTTAACGTGCATGTCTCTTGGTTTCTGTAGGAACCTGCGAGTTTGAAATATTAGTGCATCTAAAATGGATTGGCAGTGTGTTCCTATTGTGTAAACGTATTTGATGCCACTTTTTAATTCTATATACTTCTTCATATCTTGTTCAACAG
Seq C2 exon
AACAGATGTACATATGTTGGCTGTGGTGAAACCCATGTTGATCACAGTACCACCCATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214814=zf-UBP=PU(22.7=83.3)
A:
NA
C2:
PF0214814=zf-UBP=FE(30.3=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]