MmuINT0171666 @ mm10
Intron Retention
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152358146-152358698:+
Coord C1 exon
chr3:152358146-152358199
Coord A exon
chr3:152358200-152358635
Coord C2 exon
chr3:152358636-152358698
Length
436 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAT
5' ss Score
7.3
3' ss Seq
ATCTTGCATACTTCTTATAGAAT
3' ss Score
5.62
Exon sequences
Seq C1 exon
GGCGCTTGTCAGGACTGTAAAGTCAGAGGACCAAACCTGTGGGCGTGCCTGGAG
Seq A exon
GTATATGTGTGGGGGGTGTGTGTGTGTGTCTGTGTGTTTTCCTGAAAGTTTTCAGTTGAAAATTTAATTTTATACATATTAATAACAATTTTTGATGTATAAAATAATTTTACATGAGTATACTTTTAAAGCATACTAACTAAAAACTGAAAGTTCAAACTTTGGATGGATTTTAATGGAAGTATGCTTAGAGCTTTTAGTAAACCACTCAGGTATGTCTGCATTTATCTTCTATTGGAGGTGAGATAACATTCAGTTTGAAATACTTAATCTGGTCTTTGTGCTTAATACCTTTTAATTATGTTATCTGACTATACAAAGTAATTCAATAATTGAATTAGAACATAAAATCAAAACTTGAGTGTCAATACTCTCTAGTACTGATTGTAAACAGAGTGCCTATGATAAAGTCCTCCATCTTGCATACTTCTTATAG
Seq C2 exon
AATAGGTGCTCCTATGTTGGCTGCGGGGAGTCGCAAGTGGACCACAGCACCATACACTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437:ENSMUST00000026507:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214814=zf-UBP=PU(22.7=83.3)
A:
NA
C2:
PF0214814=zf-UBP=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types