RnoINT0161655 @ rn6
Intron Retention
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257568997-257569526:+
Coord C1 exon
chr2:257568997-257569050
Coord A exon
chr2:257569051-257569466
Coord C2 exon
chr2:257569467-257569526
Length
416 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CTCTTACATACTTATTATAGAAT
3' ss Score
5.73
Exon sequences
Seq C1 exon
GGTGCTTGTCAGGACTGTAAAGTCAGAGGACCAAACCTGTGGGCATGCCTAGAG
Seq A exon
GTATGTGTGCGTGTGTGTGTGTGTGTTTTCCTGAAAGTTTGCAGTCGCAAATTTATTAATAATAATTTTTGGATGTATAAAATAATTTTATATGAGTATACTTTTAAAACACAACTAATAACAAAAAAAAATGGAAGTTCAGACTGTGGATGGAGTTTTACTGAAGCATGCTTTTTGAGCTCTTAGTAAACCACTCAGGATTGTCTACGCTTACCCTCTACCGGAGGGGAGATAATGTGCCATTTTGAAATACTTAATCTGGTCTTAATGCTTAATACCTTTTAATTTCGTTATCTAACTATGCAAAGTAATTCAATCATTGGCTTAAACATAAAATCAAGACTTAATGTTATTTAGTGCTGTTTGTAGACAATGTGCCTGTGCTAAAATACTTTCCTCTTACATACTTATTATAG
Seq C2 exon
AATAGGTGTTCCTATGTTGGCTGCGGGGAGTCACAAGATCATAGCACCATACACTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294:ENSRNOT00000066125:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0214814=zf-UBP=PU(23.1=83.3)
A:
NA
C2:
PF0214814=zf-UBP=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]