GgaINT0036569 @ galGal3
Intron Retention
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19705285-19706732:+
Coord C1 exon
chr8:19705285-19705465
Coord A exon
chr8:19705466-19706605
Coord C2 exon
chr8:19706606-19706732
Length
1140 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TCTTGGTTCTAACACTCTAGGTG
3' ss Score
8.28
Exon sequences
Seq C1 exon
ATACTGTGCATTCATCTCAAAAGATTTAGACATGAACTTATGTTTTCCACAAAAATTGGAACCCATGTGTCCTTTCCATTGGAAGGCCTTGATCTTCAGCCTTTCCTTGCGAAGGACAGTCCAGCTCAGATAGTGACTTATGATCTCCTATCTGTCATCTGCCATCATGGAACTGCCAGCA
Seq A exon
GTAAGTATGAGGTTAATTGTTTTGCATTTATTATTCACATCAGCACTTCTGTTTAAAAATAATGTTTATGTACTGAAGAGTTAAATGGTTGAGAGTGGTTAATTTTAATGTTGAAGTTGAATTCTGTAAAAATTGTAAATAAATAAAAATTCTGTAATAGTACGAAACTATATATCCTTAAGAAGGTAAACAGTTCAAATAACAATAGATCCCAGCAGTTAGTTGATAAGCTGTTCTACATAACTGTTATTTGTCTAGAGGTTTTGATGCTTTGTATGTGATATTTTATTTGAAACGAATTTCCCAAAGCACCACGAAGATAACCATTCGTTTGGACGATCTCTGTCAGTTAACCCCACAATAGGGAGTGGATTGTGGTGAGAGTAGCATTAGCTTCTTAACGTTTTCTGTTGCGTTCATTTCTGCCTTAGCACTTTCAGCATCTTTAAGATACAGAAAATCAGAGAAAGAAAAGTTTAAAGCCAGAAGCCTTAAACTTCTTAGGTTTTTGTAAAAGTTACCTAATCCCTTCTGTTCCCCAAACTTGAGGTATTTGTTGTTTAATGATGTTGCTTTGCCACGGTTCTTTCCGGGATAGTATTTCATTTTCCATTTAGAGTTTGGTGAAGGATATGTCTACAAATCAGCTTAGTGACATTTAATTATTGGCAGTGGGATATGTATTTTAAAATTATAGTACTTTTAAGTGTATTATGAGTTGTGTAACTGCAAAATGATACCAAGACCATGCATTGTATTAACACGTCTGTCGTAATTTCTATTAAAAAGTGTAAGATATTAGGAGTTCAGTGTGGAATTGTTTGACAGCCCCATTCCGACTTGAATGGCGTGGCTTAGGAACACGTTAGATGGAGGGTTGCTTGAAGAGTTCAAACAAGAGTCTCTGTTCCTTCAGTATGCTGAAAACATTGCCTGGCTTTCTGCTGACTGATAGAAATGCAGTGGGAAGAAAGAAAGACTGATCCTAAACTTGAGAAAATGTAATATTCAGGTCCTGACTTGCTAATGATTTGGTATTCAAAAGACTGGCCTTTTTGGTAGTTAATCTGCCTTGCATGAAAATGAGATAAAATGGCAACTTTGCACACTACCTGGTAACTCTTGGTTCTAACACTCTAG
Seq C2 exon
GTGGACATTATATAGCTTATTGTCGAAACAATTTAAATAATCTGTGGTATGAATTTGATGACCAAAGTGTCACAGAGGTTTCAGAATCCACAGTGCAAAATGCGGAAGCCTATGTTCTCTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.3=100)
A:
NA
C2:
PF0044324=UCH=PD(7.7=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGCATTCATCTCAAAAGATT
R:
AGAAGAGAACATAGGCTTCCGC
Band lengths:
302-1442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]