MmuINT0171660 @ mm9
Intron Retention
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152042400-152043604:+
Coord C1 exon
chr3:152042400-152042580
Coord A exon
chr3:152042581-152043477
Coord C2 exon
chr3:152043478-152043604
Length
897 bp
Sequences
Splice sites
5' ss Seq
GTAGTGAGT
5' ss Score
5.8
3' ss Seq
CGCTTTTTCCTGCCTTACAGGTG
3' ss Score
12.59
Exon sequences
Seq C1 exon
ATTTTGTGTATCCACCTTAAAAGATTTCGACATGAACTGATGTTTTCCACCAAAATTAGCACCCATGTTTCCTTCCCCCTGGAAGGCCTCGATCTTCAGCCATTTCTTGCAAAGGACAGCCCAGCTCAGATTGTGACATATGATCTCCTGTCAGTCATCTGTCACCATGGGACTGCAAGTA
Seq A exon
GTGAGTACAATGGCTTGATATTTGTTTGTGATTAAAAAACATGTATCCAAGTTGATTGCTTAAATAAGCCCCACTTGACCAAAGGGAGAAAAATTTAAAAACAGGTTTCAGTGCTTATTATTAGAAAAACAGCAGACAACACAAAGTAATAACACACAGTTAGGAGAATACCTGTGTGTGGGGGCACGCACCTATTGTTCCGGTACTCAGGGGCCTGAGGCAGGAGGATTAGGAATTCCAGACCCCAAAAATGCCAGCTAGTTGAAACAGGTACCTGTAATACAGATTAGCAATCTAACTTAATCTTATTGGCAAACCTGAATGCCTGCCAAGTTCAAGGAGCCTGGGTAGCAGAGACTGTGAAATAAAAACGAGACTGTGAGATAAAAATCTCCCCGAGTTTAAGATATTTTATAACGTTGCATGAATTATTTGTGTGTGTGTATGGAATTACAATCTTCTAACCCATAAATTGTACAATTATTAAGTGTTAGAGGAAGCATTTCAGATGTTAAATTTTAAGACAGTAAATATTTTTCCGTAGACTATTTGGAATAATTGAAATTAAAGTTAGAAGGACAAATGGTAAAAACCATAACATGGCGAGTTTTGTTTTGTACAAGGCTTTTCAGAGCTGCATGACCTCAGGTGTGTGCGGCGGAACACTCTTGGGAAGCTGAGGTGGGAGGATTGTCAGTTCAAGACCAACCTGGGCTACAATAGTGAGATCTTTTCTCAAGACAAAAAGAAATGATTAAACTTGTGCTTCCTGTCTTACAGTGGTAGTGCTGAGAGTGCAGACTGAAATAATCAGAGCACAGACAACTGCTGTGACGTGTTTCAGCTGCTCTGCGGTCTGACACGTAGCACCGTAACACGCTTTTTCCTGCCTTACAG
Seq C2 exon
GTGGGCACTACATTGCCTACTGCCGAAACAATTTAAATAACCTGTGGTATGAGTTTGATGACCAGAGCGTCACTGAAGTTTCAGAGTCCACTGTACAGAATGCCGAGGCCTACGTCCTTTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437-Usp33:NM_133247:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.6=100)
A:
NA
C2:
PF0044324=UCH=PD(7.9=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTATCCACCTTAAAAGATTTCGA
R:
GTAGAAAAGGACGTAGGCCTCG
Band lengths:
302-1199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: