GgaINT0036832 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:6403205-6404153:+
Coord C1 exon
chr8:6403205-6403381
Coord A exon
chr8:6403382-6404008
Coord C2 exon
chr8:6404009-6404153
Length
627 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TCTCCCTCGACCCCCGACAGTGC
3' ss Score
5.77
Exon sequences
Seq C1 exon
TGTGATGCCAGCTGTGGACGAGGGACGAAGACCCGGGTTGTCCTGTGTGCAGGGCTGGAGAACGGGGTGTACAGGGAGTACCCTGAGAAGCGCTGCGAGGCTGGGCAGAAGCCTGAGGAGCAAGCTGCCTGCTTCATGAGGCCATGCTCAACCTGGTTCACTACCTCCTGGTCTCAG
Seq A exon
GTACGGCTCAGTGTGGCGGGGGAGCAGGAGAAGAGCTGACCCTGCGTGGTGGAACGTGACCTGCAGTGAGGATTTCAGAGCAGTTTGGTCTGCTGAGGGCTCCGTTGGGTCTGGATGGGACCACGAGCTCTGCTTTTTAGCAGACCAGGCAGCAAAAGGAGGCACTGGCACACAGCAGGTGCAGAAAACCTTAGAGCTCGTGGATTATTGCCTCAGGCAAAAGCATGCACCACACTGCAGGTGATGCAGTCACGTCTCCTCCTCTGCCAGGAGCTGATGTTCTGTCCTCTTGCTTGCTTTAGTTAGCATTTAGTGAATAGGAGGGGAGGCGAAGCTGCCATTCTGTCCATCTTCTAAAACAGCACCAGCATTCAAAGCAAAACCAACTCTGAGCTGCATTAAAAAGCAGAAAGCAGCCTCCCCCTGCCCCAGCTTCGAGATGCTCTCCTCAAGCAACCAGAGGGGAGCCTGAGTTTGGGGTTAGCGTCAGATCTGACCCAAAGCTCCTCGAGAGCAGTCTCCAAAGCACAGACCGCGAGGTCTTCAGTGGAAGAAAGAGCTCGGGACCCATAGCTCAATAGAAACCCACCTCTCATGCTCTCTCCCCTCTCCCTCGACCCCCGACAG
Seq C2 exon
TGCAGCAAGACGTGCGGTGCTGGTGTGCGGCTGCGCGAGGTGAAGTGCTACCAGGGGGAAGCGCTGGCCCAGGGCTGTGACCCCGCTTCCAAACCAGAGGGCAGGCAGACCTGTCAGCTCCAGCCGTGCCCCACGGAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032:ENSGALT00000006421:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(84.2=81.4),PF0009014=TSP_1=PU(12.0=10.2)
A:
NA
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTGGACGAGGGAC
R:
GGCTGGAGCTGACAGGTCT
Band lengths:
294-921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]