BtaINT0014346 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007492 | ADAMTSL2
Description
ADAMTS-like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr11:104502454-104504460:+
Coord C1 exon
chr11:104502454-104502630
Coord A exon
chr11:104502631-104504315
Coord C2 exon
chr11:104504316-104504460
Length
1685 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CGCCGTCTCTCCCCGCTCAGTGC
3' ss Score
8.74
Exon sequences
Seq C1 exon
TGCAACACCACCTGTGGCAGAGGCGTGAAGAAGAGGCTGGTCCTGTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGCGGCCCCGAGTGTGGCCTGGCCAAGAAGCCCCCCGAGGAGAGCACTTGCTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCGGAG
Seq A exon
GTGAGCCCTCCACTGGCCGTCCTAAGGCCAGGCCTGATCTCTGGTCCTGCCGAAAGACCTCCTCTCCCACCCCGAGTGCCCCTCACGTCCCCCGGCTCAGCCTCCATCAGGGCTTTCCCTCCCTGGAGAGATTGTCAGCGCTTCCACGTTGGCGAGCACGAGGGCTGCCTCCTCCGAGTCCTCCCGGGTCTCACCTCTGGGATCCCTGCCGCACTCATCCGGGGCCCGTTTATCGGCCCAGGTCGCTTTGGCCTTGCCTGTGGAAGCCTTTCAGTCACGCGCTTGAAGGCCTGTGTGCCTGACACTCACCATGGGGCAGACAGATCCCGAGTGGGAACTGGGAGGGTGGGGAGCCAGAGTCAAGGCAGGGACACAGAATCAGAGAGGCAGAGGGGATGGGAGGACGGTGCGCGCCGGGCAGAGGGAAGCCAGGAGGAGTGGCAGCCGCCGGCCTGACTCTGGCCTGTGGGCTCCTTCCTCCGCCTCTGGCTGGAGGGTGGCGTGGAGCGGGGCCTCTCCACTCTTACAGCCCAGGGGTGCGTCTCGGTGGCCGTTTTTGCTGGTTCCCACGCACCCCCCTCTCTCCTGGGCTGCATCACCGGCCCCCACCTGGAGGCCCCCCTCCACCCGGGGATGCACAGCTTCCGGGGTAGGGGGGCCAGACGGGGAGGCCCAGATGGGTCTTCGCCCAGGATCCTGGGGCACGGGGGCAGGGCACCCATCACCCTGATGAGTGGGTGGGCGAGGGGTGACCAGACGGTGGGCAGGAGGACCTCTGCGTCCTTGTCCCTGGCTGCGGTGGGGTTTTTTCCCCCTGTGGCTGCCTCTGCCTGGGTCAGGGGCTTAGTAAGAGTGTGTCTTCTGAGCCATCCACCCAGGGTGGAGGAGTGGGAGCTAGGAAAGGCCAGATGTGCGTTCTCTCTGGGGGGTGGGGGATGGCTGCGGGTGCCTTGGGGCATCCCCCCAAAGGCCGATTGTTGTCTGGCTCCGTCCCCGAGGCTGGGCTGGTTCCCTCAAGCTGGGTGCAGGCATCAGGCTGGAAGCCCTCCCGGGGCCTCTGTGAATAGAACTGGTGGGGGGTGGAGTGGGGTGGTCAGGACTGGAGCCCCACCCCCAACCTCCACAGACCGAGGGCTCAGGTCCCAGCTGAGCCTGGGTGATATGGGGTCACCCACAGCAGGGGGAGCCAGAGGGAGCCAGCGCCTTTAGGATCTCAGTGGGAGGCCAGCGGGGTAACTGGGGTCAGCAGATGGCCCTGGTGTTCTGGGCAGCTTGGCAGGGTTTTCTGAGGGGAACATCTGGACAGGAAGCTGCGGGTGGGGGTGCTGGCTCTGGAAGATGTAGTTGATTGGCCCCCAGCTCTTAACTGGAGCGGGAAGCCAGTCTCTCCCTGGGCTGTGGCCCTCTGTGTCCTGAGCCTCCCGCAGCACAGGACGCTGGAGAGCTGGAACCAAAGGACCTGCCTGGGGGGAGAGATGGGGGGTCCACACCCTCACGGGGAAGCTGAGTAGTACGTGGCAGGGGGGCGGGGGCAGCAGCATCTGGTTGCCCGAGCCCCTGAGCATCCGTGTGTCCCGCGTCCATGGAGACTCAGCAACCTGGCAAGAGGAGGAGAGTCCCACCACTCCTCTGGCTGGGCCCCTGCCCCACCGGGGGCTGTGGTCACGCCGTCTCTCCCCGCTCAG
Seq C2 exon
TGCACCAAGACGTGTGGGGTGGGCGTGCGGATGCGCGACGTGAAGTGCTACCAGGGCACCGACATTGTCCGGGGCTGCGACCCGCTGGTGAAGCCTGTTGGCAGACAAGCCTGCGACCTGCAGCCTTGCCCAACGGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007492:ENSBTAT00000009855:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(85.7=81.4),PF0009014=TSP_1=PU(12.0=10.2)
A:
NA
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAGAGGCGTGAAGAAG
R:
CTCCGTTGGGCAAGGCTG
Band lengths:
302-1987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development