MmuINT0011526 @ mm10
Intron Retention
Gene
ENSMUSG00000036040 | Adamtsl2
Description
ADAMTS-like 2 [Source:MGI Symbol;Acc:MGI:1925044]
Coordinates
chr2:27104749-27107539:+
Coord C1 exon
chr2:27104749-27104925
Coord A exon
chr2:27104926-27107394
Coord C2 exon
chr2:27107395-27107539
Length
2469 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GTCTATCTGTCCCACACCAGTGC
3' ss Score
5.92
Exon sequences
Seq C1 exon
TGCAATACCACCTGTGGGCGTGGTGTGAAAAAGCGGTTAGTTCTCTGCATGGAGCTGGCCAACGGAAAGCCTCAGATCCGCAGTGGCCCTGAATGCGGGTTAGCCAGGAAGCCCCCTGAGGAGAGCACGTGCTTCGAGAGGCCTTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
Seq A exon
GTGAGCACCCAGCAAGCCCCGCTGAGACTGCTTTAGATGAGGCCTGGGCTCTGATCCTGCCACAGAACGTCCATCTCGGTCAATGTCTGTGGAGCCTTCTTCCCTGTTCAGTCAGTCAAGGTGCTTGTCCCTGGATGCTTCTAGATTAGCTGGAAGAGAGCCAGCCAGAAGTCTTTTCTGATCTTACCTAGGTGTCCCTGCAACTCATTTTGTGGGCCTGTCTGGGCCTGGTTACTTCTGGCTTAAAGTTGAAGCTTGTAAGTGGTGTGTTTGGTATCTCTCAAGGATAGTCCAACTCCTATAGACACAGAGGGTAATAAGATTGGCTGAGGCATGGCTAAGGCAGGGACGTGAGACTTGAGCACACAGGTGGCAGGACGTGAGCTCTAGGTTAAGACACTGAGCCAGTGGGCCAAAGAGCAAGCTTTCCTGGCTAGGTAGGACAGAGCTGAGCTCTCATCTCTGAAGCAAGAACAGAGAGCCCTCACCTGTTAGAGGTCACTGAGGGCAGCTGTGGCCCAGCACTTGTCACATATCTCTTTTCCAAATGGCACTTATGGAGAGGAAGAAACCGAAGTTGAGAGAGCTTTCCAACATGGGGGGCAGAGTTTAAGGGGCCCAGGAGTAGCCTCAACTTTCAGGCTAGTTATGCACAGGCAGAGAGGCAGTGAGTAACAGAGAGGGATGGGAGGGGCTCCCACCCATGGGGTGGGAGGGGCTCGCTGTTTAGCCTCTGATTGGCACAGCAGTAACTGCACCTCTGGTTCTCAGGCCATTGCCTTCTCTATGTCCATCCCATAGCGTGTCTGTCCTGTGTAAAGACATGCGGAGTTCAGAGCCATCTTTAAGTTTCTCTTGTCAGGCTGAGGACAGGACTCATGTGGCCAGGCTGGGCAGCACAGTGTTTCCAGCTGCCTGTGGCTTGGGCCTTACATAGGTCAATTCTGAATGCTTAGGAACAGTGTGGAGTTATGGATGGGGCCTGGACCCCAAAGCCTTCCTTCACTATGGTGTTCTATAGTGTCCAAGAGCCCAACGTATACGTCCTCTCCAGGTTCAGCTGCTGGAATGGGTAGGTTACAAAGCCAAGACTTGAAAGTCCAAGGGCTCTGTGGGGTGAGGCCCCAGTAGCTGCCCTTCTCAAGCAGAGGCGTAGGAACTCCAGGGTTCTTCTCTACACACACACACACACACACACACACACACACACACACACACACACACACTGTGGTGTCCACCAATGAACATCACTGCCAAGGTAAGAAGGAAGGAAGGTAGGGCTGTGGTTGACTAGAGAGGGTGCGTGGTAGAGCTCGAGGACCAGCAAGCATGATTAGGGGAAGCAGGTAGAGGGAGGGAGGGAGACTCTCAGGTGTCTCTGGAGTGAAGGTCCCCTCTGAACTGACTGAACCTAGCCAGAGGTCTGGCTGTGACCTGGGGAGCCCAGTGACTCCTGTACTTTAAGAAGAACACCGGTCTCAGGGTGGCTGTGTAGCCAGAGCCGGGCACCATGTTGGTCAATGGGAAGGGAGGAGAAGAAATAAGGGGGTCCCCAAAGTAGCCATGAGGGAGGGGTGCTTCCCATATTTCCCTGATGAGAGAGGAGCAGACTGGAGCACATGAGTGGTGGACATGTACTGTCCTTTCAGCCTCTGGCTGGGGCAGTGCCATTCTCTATGGCTGCCACCTCACGATGCATCAGCTCAGTGCTTTTCCCATCCAGCCATTCTGTTCCATGCACTTTCCAGGGACAGACAAGCAGGTTCTAGGGCCTGCCAGGAGCCCACTTATCTTTAGGGAATCTGCAGAGGTGAACTATCCCCTCTGCCTGTGCCAAGCCAGCCTCTCCTCTTCTCAGGGAGGGTGAGCAGGCAGGTGGCCTCACGTCAGCCTTCATCAGCTCCTCTGTGTCTGGTAACCAGGCAAGGAGTGAGCCTGGGGCAGGGGCCTCCCCATACCTCAGGTCTAGGCATGCCCGGGTGATGCGGGGTCACTACATCAGGGAACCACTGCCTGCAGGATCTTGGCAGGGGGATAGCAGGGTAATTGGGGTCAGCAGATGTCCCTGGTATTCTGGGTAACTCAGCAGGCTTTCTGAGGGGAACATCTGGACTCAGAGTGATGGCTCTGGATGTTGCATTGATTGGTCCATGGCAAACCCTCTGTGTCACTAATCTGAGACAGATGGAACTTGAGCACTCAGGAGGTCACAGTCGGAGCAGGAGGGGCCACCCTCTCACTGTGAGGCTGGGAAAACTGAGGCAAAGCAGCCAGATGGTGCCTTTCCTTCAGCTACCCCTACTCAGTCCCAGCTCCAGCTTGAGGTTCCAAGGAACTGCTGTGTCCTTGCCAGCCTGTGGGATGGTCATGGCACAGAAGGACAGGTCCTGGGTGATGTGATTCTCTGTCTCTGTCACTATGGGGAGCCTTGTTATGCACCTGTCTGTCTGTCTATCTGTCCCACACCAG
Seq C2 exon
TGCACCAAAACATGTGGGGTAGGTGTGAGGATGCGAGACGTGAAGTGTTACCAGGGAACCGACATTGTCCGTGGATGTGACCCACTGGTGAAGCCTGTTGGCCGACAGGCTTGTGACTTGCAGCCATGCCCCACAGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036040:ENSMUST00000091233:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(80.5=55.9),PF0009014=TSP_1=PU(12.0=10.2)
A:
NA
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types