HsaINT1002815 @ hg38
Intron Retention
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133570331-133573987:+
Coord C1 exon
chr9:133570331-133570507
Coord A exon
chr9:133570508-133573842
Coord C2 exon
chr9:133573843-133573987
Length
3335 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTCTGTCTCTCCCACACCAGTGC
3' ss Score
6.99
Exon sequences
Seq C1 exon
TGCAACACCACCTGCGGGCGCGGGGTCAAGAAGCGGCTGGTGCTCTGCATGGAGCTGGCCAACGGGAAGCCGCAGACGCGCAGTGGCCCCGAGTGCGGGCTCGCCAAGAAGCCTCCCGAGGAGAGCACGTGTTTCGAGAGGCCCTGCTTCAAGTGGTACACCAGCCCCTGGTCAGAG
Seq A exon
GTGAGCTCCCAGCCGGCCCCTCTGAGGTTGCCTGAGGCCAGACCTGAATGTCGATCCCGCCCCTCCCGCCTCAAGCCTCCTTAAGTGCTTCCTGCTCCTCCCTCCCTGACAGCCTCTGTGAGGGCTTTCCTTCCCGGGAAAGCTTCTCAACTCCACCACGTCAGCTGGTGCGAGAGCCAGCACCTCCAGGAAGCCTTCTCTGATCTTGTCCCTGGGATCCCTACGGCACTCGTCCTGGGCCTTTTTGGGCCCGGGAACTCCGGCCTCGAATTGTGGCCTCTAAGTTGCATGTTTGGCAGCCCATGTGCCGGACACCGCGGGACAGACAGACCCCAGGTGGGCGGGGGGAGCAGATTGGGCTGAGGCAGACACAGGCTTGGCCCTCTGGGAGCCACAGCCAAGGCAGCCGCTTGGAATTTAGGGAGACAGTAATAGACATGCACCCCCATGTCAGGACACCGGCGGGGCCAGAGGGAAGGGCAGTACGTCTCCTGCACGGGTCTGGCCCCTCCGAGATTCTTTGACTCTTGGGCCCCCAGAATGCCCCAGCGTCAGGATGTGAGGCAGGACTATGCTGAGATCGCGGTTCTCTTTGTAGAGGGGAGGAGAGCCCTCCCACCCTGAGGCCCTGAGGCACGTGTGGCAACCCTCACCCAGTTCTTTGCCTGAAGGGTCTCCTCTCTCCCAATAGTGCCATGAGGAGAGGTTCTTTTCCCCATTCCTCAGAGGTTCAGGGAGCTCTCTGGCCCACTCGGGGTCCCACAGTTACTGGGGGCTGTAGCAGACATTGGAGGCCAGGCCTGTCCATGGCACTAGAGTGAAACCCAGGTGGGGTGTGGCATCTGCAAGGGAAGGGGGGCCTGAACCAGCTCATCCCAAGGGGCCCTGGGCAGGGAGCCCCGAGGTGGGTGGGCAGCCCTGGTTTCACAGAGGGGGTGGCAAACTGGGTGCCCCCTCGCCCCCAGTTGTCTTGCAGAGCAAACAGGTTGCTTTCACCTCTCCTGCTGTTTTCCCCTTCTGCTGCACTTCCTGTGGGGCCTCCGGGTGACTCCAGAGCCTCGCCATGTGCCAGTGGGTGCCCCTCTGCCTTCTGGGCCCCACGGAGGCAGCCCTGTCTAGACTCCAGCTTGAGTAACTCACATCAGCTGTGACACATCAGCCATCCGTGCCCCTTTCACAGCAGCGCCAGCCCTGGCCCCAGACCCAGCCGCCTCACACCTGGCAATGCCATGAGCTTCTGAGAGGGGGACCTGGGGGTGTCCAGAGGGTATCTGGGAATCACTGGGCAGGTGCTTCCATAGCCAGGCTGTTTACCTGGGGTCTCCAGCTACCTCTGCCCTCAGTTTCCTGATGGGCCAACTCTGAATACCCAGGCGACAAAATGGGGGTGTCAGACGGAACTCAGAGCCTGGAACGTTCATGGTGAAGTGCCCAGGTGTGTATCAGGCCCTGGCGCCCGAGGGCTCCAAGTCTTGGTTGCTGTGGCGGGTGGATGCAAGATCCTAAACCTTATGAGTTCAAGGCAGAGAGTCCAAGAGTCTGTGAGGAGCGAGCTGGGGACCCCAGTGCGGCCCTGCTCAGAGATTGGGGTCCAGGCCCCGGGCCCTTGCCAGGTCCCAGGCTCCTCGTGCACGCTTGGTGGTGTCTGGCCTCCACCCTGCCCCGCCACCCCCCACCCCCCACCCCGCCCCAGGGCCTCTGCCTGCCCTGTAGCACACATGCTTGTTCAGGAGGGAGAACACACACTCACTCATTCCCTGTTGCCCACCAAAGGACCCCCGAGTGAGGAGGGGAAAGGCTGAGGGTGGGCCTGGGGCTTCCCAGGGGAGGCCTGGGCAGAGCCAGGGCCTGAAGGGTGAGCCGGCTTTTGCCGGGAGTCAGCTGGAGAGACCACGGCGTGCCGGGCCCTGAAGCCTCCTTCTGGAAAGGCTAAGCCCGGTGGGAGGGAGAGTGGGAAGGGGCAGGGAGGCTGACTGGGGTTCCAGGGCCCCAGGGAGCCAGCCCAGGTCTGTAGTTTGGGAAGAGCACTAGCTTCAGATGGGGGGGCCACTGTGGGGCCAGGAAACACGGACCCACTAGGTGCAGGTACCTTGCTGGGTGATGAGCCATGGCACGGGGGGAGCCATGAAGCGATGAAGCGGGGACCCCAGAAGGACAGCCTGGGGTGCTGGGGAGGAGCATCCCCCTAGCCCTGATGAGGAGGTGGCAGGGCCAGACGAGGTGCAGCTGGCACAGACGGCTGGTGGGCGCGTGGACTCCTTCTTCCTGGTGGCTGCCCCCCGATGCCGGTGCATAGCGGCGGCTCAGTCAGTGTTTGTTGCCCCAGCTGCCCAGTCCCATCCACTCCCCAGGGGCAGAGGAGCTGGCACCAGGGCTGGCCGGGAATGTGCTGCTCTCCAGAGGCACGTCCAGAGGCTCCTCAGGGCCCTGCCAAAGGCTGATTGTCCTCACGCCGTCAGCGCCAAGCCAGCCTCTCCTCGCCTGCAGACGGTGCCAGCCCCCACCCCCTGGCTCGGAGCAGGCAGGCAGGCAGCAGTCTTTCTGCCAAGTCTTAATCGGTCTTCCTTGCTCCTTTGCAAACAGAAGTGGAGAGTGGGTCCCAGGGCCAGGGCCTCCCACCCCACCCATCTCAGAGGACAGAGGGCTCAGGTCCCAGACGTGCCTGGATGATGTGGGGTCACCCACATTGGGGGGAGTGTGAGGGAGCCACCGCCTGTGGGATCTTGGCAGGAGGACAGCAGGGTGACTGGGGCCAGCAGATGTCTCTGGTGTTCTGGGGAGCTCAGCGGGGTTTTCCAAGGGGAACATCTGGACGGGGAGCCACTGGAGGGGGTGGTGACTTCGCGAGATGCATTTGATCGGCCCACAACAAACAGTCTGCACCACAGACCCAGGAAAGCTGGGGCCAGAGGACCCTCAGGGAGATGGGAGAGGAGGGACCACCCCTCACTGTGCATCTGGGGAGACTGAGGCAGCCCTGCGTGGGGAGAGAATCAGATCCTCCTGACGGCCAGCTAGTGCCTGGACCCCCTGGGAAATGAGAGAGGAGGGACCACCCCTCACTGTGGATCTGGGGAGACTGAGGCAGCCCTGGGTGGGAGACAATCAGAGCCTCCCGAATGCCAGCCAGTGCCCTTTTGTCGGCATCTCAACTCAGCCTTGGAGCCGCAGGTCTAGTTTCAAATGGGCTTCCACGGGTCCTGTGTCAGTTGGGACTCATGGCCGCCTGGGAAGGGTGGGGTGGGGAAGGGGGAGTGTGCAGGTTCCCCGCCCCCTGCCCAGGCCCCTGCCCCATCAGGAGGCTTTCCCCATGCCTTCTGTCTCTCCCACACCAG
Seq C2 exon
TGCACCAAGACCTGCGGGGTGGGCGTGAGGATGCGAGACGTCAAGTGCTACCAGGGGACCGACATCGTCCGTGGTTGCGATCCGTTGGTGAAGCCCGTTGGCAGACAGGCCTGTGATCTGCAGCCCTGCCCCACGGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859:ENST00000354484:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(12.0=10.2)
A:
NA
C2:
PF0009014=TSP_1=PD(84.0=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains