GgaINT0126475 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:7663011-7663343:+
Coord C1 exon
chr17:7663011-7663155
Coord A exon
chr17:7663156-7663198
Coord C2 exon
chr17:7663199-7663343
Length
43 bp
Sequences
Splice sites
5' ss Seq
TGTGCTGGG
5' ss Score
-26.94
3' ss Seq
CCCCACTCTCTGTTCCCCAGTGC
3' ss Score
8.12
Exon sequences
Seq C1 exon
TCTGCTGCAGACGTCTGATGCTGCTGGCAGCAGTGAGGCAGTGAGGGGCCAGCAGTGCGGTGTGCGGACACAGTGCTCAGCCATGGGCAGTGCTCACCCATACCCCCACTGCTCCAGGGGTTTTTTGTTTTGCACAGCCCCCTGT
Seq A exon
GCTGGGTGGGGGTTCTCACCTCACCCCACTCTCTGTTCCCCAG
Seq C2 exon
TGCACCAAAACCTGCGGCATCGGTGTGAGGATGCGGGATGTCAAGTGCTACCAGGGGAAGGACATCGTCCGCGGCTGCGACCCTCTGGTGAAGCCAGTGGGCAAGCAGACCTGTGACCTGCAGCCCTGCCCCACCGAGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002955:ENSGALT00000004669:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCAGTGCTCACCCATA
R:
GACGATGTCCTTCCCCTGGTA
Band lengths:
132-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]