GgaINT0037223 @ galGal4
Intron Retention
Gene
ENSGALG00000005911 | MTF2
Description
metal-response element-binding transcription factor 2 [Source:RefSeq peptide;Acc:NP_989839]
Coordinates
chr8:12949107-12950064:-
Coord C1 exon
chr8:12949916-12950064
Coord A exon
chr8:12949203-12949915
Coord C2 exon
chr8:12949107-12949202
Length
713 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTTTCTTTTTGTTGGTGAAGCTG
3' ss Score
5.01
Exon sequences
Seq C1 exon
AGAGGTGGTGCGCTTAAGAAAGGACCAAATGCCAAAGCACTGCAAGTCATGAAACAAACTTTACCATATAACGCAACAGACCTTGAGTGGGATGCGGGTCATAAAACCAATGTTCAGCAGTGTTACTGCTATTGTGGAGGACCTGGAGA
Seq A exon
GTAAGTAAATAGATGATCTGTGTCAACTTTTCTCCACAATGCACCTGCAAACCTCGACTGATCCTGAGGACAAACACTTTTCAAGCTCTTGGAGTGTTTTTAGAAAGGCATCCTTATAAAACATTGCCTGTTAATTTAAGTTTCTATGTGTATAAACAGTGACACCCTGAAAAAGAAATGGGAATATTTTGTTGCTGTGTTATTGTTTAGATTTCACAGGTATTTCACTGTTTGTTCATGTGAATAAAGTTATATTGAGTTGTTCCCTTGTGTTTGAGTCAGAATAAATACTAAGGATAGTGTGAGATAGAATCCTGTCTGTTCTGTGACATTATGCCTTATATTGTAATTATTATGAGGGTGGGGGGAAAGAAGGTTCACTTTCCTCTTGAGGGTATTATGAGAAACAAGGACATCCGAACAGGTAGAGCTTGAATACTCTGGTATCTACACAAGTGAGTGGACAAGTAGCACTGAGGGTTTGAAGTCAGAGCAAGTCAGAGTCCTGCAAAAAAGCAAAGTTTTAAAATTTCTACTTAATTTATTCCTAGTCATTCTTTACTAGTAATTGTTCACTGCAGAACTAAATATCCTTTCAGGTAACTGTGAAAATCACTTTATGTCAGAGGATCCCTTGCTATTTAATCTAAATGTAATGAGGAGCCATTTTGAGTAACATATAATGCATCTTGTTTTTCTTTTTGTTGGTGAAG
Seq C2 exon
CTGGTATCTAAAGATGTTGCAGTGCTGCAAATGCAAGCAGTGGTTCCATGAGGCTTGTGTGCAGTGCCTCCAAAAGCCGATGCTTTTTGGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005911:ENSGALT00000009507:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(15.1=16.0)
A:
NA
C2:
PF0062824=PHD=FE(60.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTGCGCTTAAGAAAGG
R:
CTGTCACCAAAAAGCATCGGC
Band lengths:
243-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]