RnoINT0095106 @ rn6
Intron Retention
Gene
ENSRNOG00000000075 | Mtf2
Description
metal response element binding transcription factor 2 [Source:RGD Symbol;Acc:1304727]
Coordinates
chr14:2677394-2679865:-
Coord C1 exon
chr14:2679717-2679865
Coord A exon
chr14:2677490-2679716
Coord C2 exon
chr14:2677394-2677489
Length
2227 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTTTTTTTTTTTTGTGATAGCTG
3' ss Score
9.16
Exon sequences
Seq C1 exon
AGGGGTGGTGCACTTAAGAAAGGACCAAATGCCAAAGCACTGCAAGTCATGAAGCAGACATTACCCTATAGCGTGGCTGACCTTGAATGGGATGCAGGTCATAAAACCAACGTTCAGCAGTGCTACTGCTACTGTGGAGGCCCTGGAGA
Seq A exon
GTAAGTAACAGTTACGTCACGTCCTCTGATGTGATTTATACTAATGCACAGTATCTTTTCTCTTTGTAAAAATGTTTTTTATGAAGACCCCGTTTTGTGTGAATCGTAGTCTCGCTCTATGTGTACCACTTAACTGGCCTCAGGTGCTTGAGGCCAAGCTTTCCAAGAGCACTAGGGCTGTGGGTGCTTGGTTTGTCTTCTCATCACTGATGGTGGCAGTGATAGGGAATTGCAAATGGATAAAACAATTGGTTAAGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCAATTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATAGAATCTGATGCCCTCTTCTGTTGTGTCTGAAAACATCTACAGTGTACTCTTACATAAAGTAAATAAATCTTTTAAAGAAATGTTCATAAACAGAAATCTCTATGGCCATTTGGCATTTGGGCTAAACACTGGTACCTTTTAATCTATCTTTCGTAGGATACAGAGAAGTGATGTAAAAAAGCATAATAAACTACAGCAAAAAAGTTTCAGGGGCAGAGGAAAGATGGCTCCAGGGGTTGATAGCTCTTCTAGAGGATCTTAGGTGTGTTCTCAGCAACCATATTGGTGACTCACAACCAACTGCAACTCTGGGTCCAGGGATCCTCACCCTTTTCTGGGCATTTACACTCAACATGAATGTATCCACACACAGGCACACAAATTTATGGGGGAGGTGTAGAAGGGTGGGCTTGGTGATTAAGAGTACATGCTGCTCTTCAGAGGACCTGTGTTCATTCCTAGCACATGATGCACATAGAGAGAAGCACTGCACGCACACGATGCACATAGAGAAGAGCACTGCACGCACACGATGCACAGAGAGGAGCACTGCATGCACGCGATGCTCATAGAGAGGAGCACTGCACGTGCGTGATGCACATAGAGAGAAGCAGGCTCCCACATATACACATATTTTAAAAAATTTTTTTAATTGCCAGCTTGGACCTAGGCGTGGTGGTACATATCTAGTTGTAGTTTACTCAGGAGGTGAAGAAGGGTGATCGCTTCATCCTAAGACAGTAGTTCTCAACCTTCCTAATGCAGCAACCCTTTAATACACTTACTTCCTCGTGTTGTGGTGACCCCCGCCCCATCATAAAAGTATTTTCATTACTAAGTTTGCTAATGTTATAAATTATAATACAAATTTCTGTGTTTTTCCATAGTCTTAGATGACTTCTGTGAAAGGGTCATTTGATCTTAAAGGGCTTCTAACTCACAGGTTGAGAACTCTTGGCTAGCTAGGAGTTTAGGGTTCACTTGTGTATCAGTAAGAACCCAAGCTGAAAAAAGATCTTTTTAAACAGTTGGTGGCTATGGTTGTTATCAAGCATTGAAAGACAACCTCAAAATGAGACTCAAAACATTTCAAAGAGGCCCGAGGATGTAGCTGAGCTGTAAGAGTGCCTGTCTAGCAGGCCATGAACTGGATGAAGTAGTGATTAATCTCAGTACAAGGAAGTGGGAGGACCCTAGTTTTGAGGTCATTTTCACTTTGAGGCTAGCCTGTAATATGTGAGACCATGTTTCAAAAAAAAAAAAAATCAGAAATAAAAACAACAAGCAAAATAAAAAGTGCTATATGGGTGTGTAGTTCATTGGTAAAGTGTGTAGAACAACCTGGATTAGACCTCACTACAAAAAGCAAACCCCCTGAATCTTGTGATTTGAGAGAGATCAAAGATACTAATTAACCTTAAAGAGCATATAGATTTCCATGATAGGAGAGGAAGGATGAAATAATTGATACTAACCTTTTTGGGAACAATTAATACTAATATTAGTATTTATAGCAGAAACAGTGCTTTTATCAGAACTGTATTAGTTATATTTTCTTTAAAAGAATTCTTGCTTTATCAGTAAGTAGTAATTTAGCTTAATAATAGTGCCATACACTTATAATCCTAGCACTGGGGAGGCCAGGGGAGTTATGAGTTGGAGACCAGTCTTGAACTACAGTGAAGTATTGTTTTATAAAGAATTAATTTCAGGGGTTGGGGATTTAGTTTAGGGGTAGAGCACTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAATTAATTAATTTCATTTCCTCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTGTGATAG
Seq C2 exon
CTGGTATTTAAAGATGCTGCAGTGCTGCAAATGTAAGCAGTGGTTTCATGAGGCTTGTGTCCAATGCCTTCAAAAGCCAATGCTGTTTGGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000075:ENSRNOT00000000086:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(15.1=16.0)
A:
NA
C2:
PF0062824=PHD=FE(60.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]