GgaINT0037241 @ galGal3
Intron Retention
Gene
ENSGALG00000003933 | QSOX1
Description
NA
Coordinates
chr8:6290482-6290807:-
Coord C1 exon
chr8:6290777-6290807
Coord A exon
chr8:6290628-6290776
Coord C2 exon
chr8:6290482-6290627
Length
149 bp
Sequences
Splice sites
5' ss Seq
TGGGTACGG
5' ss Score
6.54
3' ss Seq
GACGCTGGGTCCGCTCGCAGGTA
3' ss Score
7.7
Exon sequences
Seq C1 exon
CAGAAGCAGTTCCTTCGTGGCAGAGAGGTGG
Seq A exon
GTACGGAGAGGGTGGGTGAGCTGTTCCCTTTGGGCACCTTCCAGTGGGTCGGTCCACCCGGCATTGCCTTCTCCTCCTTGAACGAGGAGTGGGGACGATGGGGATGCTCGCCCATCCTCCCAACATCCTGACGCTGGGTCCGCTCGCAG
Seq C2 exon
GTAGCCCTGGACCTGCTGCAGTACGAGAACGTGGCGGTGAGGAGGGTGCTGAGCAGCGAGGAGGAGCTGGTGGAGAAGTTTGGTGTCACCACCTTCCCCTCCGCCTACCTGCTGCTCCGCAACGGCTCCTTCTCCCGCCTGCCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003933:ENSGALT00000006266:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGTTCCTTCGTGGCAG
R:
GGCAGGCGGGAGAAGGAG
Band lengths:
172-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]