BtaINT0121051 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014191 | QSOX1
Description
quiescin Q6 sulfhydryl oxidase 1 [Source:HGNC Symbol;Acc:HGNC:9756]
Coordinates
chr16:62825085-62828507:+
Coord C1 exon
chr16:62825085-62825175
Coord A exon
chr16:62825176-62828361
Coord C2 exon
chr16:62828362-62828507
Length
3186 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ATGTTCCCCTGTCTCTGCAGGTG
3' ss Score
13.08
Exon sequences
Seq C1 exon
GCTGGAGGAGATTACTGGATTCTTTGCAAGAAACAATGAAGAGTATCTGGCCCTGATCTTTGAAAAGGAAGGCTCCTACCTGGGCAGAGAG
Seq A exon
GTGAGCTGCCTGCAGGGTTCCTGCATCTCCAGGATAGACATTGTGGGAGAGAGAGCCCATTGAGTTCAAGAGCAGGGCTGGTCCTGTGCACTTCTTAGCCCAGCACTGGCCTTCCCCCTGCTGGCGGAAGTGGGGAAGTGTAGGAGCTGGACCTTTCCGTTTAAAGCCTTTTTGTCCGTTTTGATCTTCCTCTTGGCAACTGAGGGCTTCCCAGATGGCTCAGTGGTAAAGAATCTGCCTGCCAATGCTGGAGATTCAGGAAACTAGAGTTCGATCCCTGGGTCCAGAAGGTCCCCTGGAGGAGAAAGTGGCAACCCACTCCAGTATTTTTGCCTGAGAAATCCTATGAACTGAGGAGCCTGGAGGGCTACAGTCCATGGGATCGCAAGGAGTTGGACACGACTGAGCACACACGTTTGCATGGAAAATGAAAATAATAACATCTGCTATTTATTAAGCATTGCTAGATTGCTGACACATATAGTTGCTAATTTTTCTAATTAACAAAGATGGTCAAATAACAAGCCGAAAATCACACGGCCAGTAAGTTGGTACAGCAGGACTTCAAACCAGGTTTGTCTGCCTCCAAAGCTCGTGTTGTTCCTATGCTACCCCACCCCCAAAGAAGTGGAGTAACAAATCAGGGGGAGGGAACCTCAGAGAGCATCTAGTCCCTCTTGAGGATATGGGGTCCCTTCCCAGGTGAAACAGATAACAAAATCAGGCTGGTTGGAATCTCCACTCCAACATTTATGATCAGTGGTCCTCAACCTTTTTGGCACCAGGGACTGGTTTGGTGGAAAACAATTTTTCCACGAACTGAATGGAGGGGATAGTTTCAGGATGATTCAAACACATTTCATTTATTGTGTACTTTATTTATAATCTAATGCTACTGCTGATCTGACAGGAGGCACCAGTCTGCAGCCTGGAGGGTGGGGACCCCTTACTTATGTGATATGGCTGTGATCGTTAGTCAACTTTTCTGATCTCATTTCCCTGTCTTTGAAGTGGTGATAATTACCTTTTGTCAGAGAGTGGTTGGGAACAGCAGGTGAGACAGCATAGGGGAAGAACCTGGGTGAGTAACTGGCAAAGAGTATGCACTTTATAAAGATCCATCCCAGCCTGCTGTGTACAGCCCGCCATTCTGTGGCTACATCATGAGCTTCTCAGGCCCCTGGGCTTATTCCAGGTCCCGAGGTGGGACAGGCCAGTGCCCGGGAGATGTTCCAAGGCAGTGCTAGGAGATAAGGAGGGGATGAAATTAACACCACTGTTGGATCTGGGTGGTTCTCCTCCTGAAACTCACCAAGCACAGTAGAACACTCTGAGCTTTCTCCAGACCTCTCAGCCTTGAGACGGGAAACATGGAGGTGGGAGGAGCAGGGAGCTTTGCTGAAGGATGCCTGGCCCTTCTGGGGTCCCCTTCCACACCTGGGGTCATGCCTGTAGAGATGACTGATGAATGTTCACTGGAATAGCTCTCCCCACTATACTCCCTCCATCCCTCTAATAACCAGGGGCAGGGGACCCGTGTTCATGCAAAGGCGCTCAGGGATGGGTGGTTTGAGAGGGAGGAGGACACACTGGCCAAGAGCCCTGGCTCTGGAGGCAGATTGACTTGGGATTTATAGCCCAGCTCAGGCACTTGTTAGCTGTGTGATCTGATCACGTGATTTCACTGCTGCGCTTTCAGCTTTTGCCTCTACTGTACAATAGGAGTTTGATTTTTTAAACGGATACTTACATACATACTATTTACTGGTCATTATTAGAAGCATTCTTGTAAAATTAATCTATTCAGTCTTCTTAACAGCCCTTGGAGGGGGGTATTATTACAATTTTGCAAGTAAGGAAATGGAGTCTGGGAGAGATTTAGTCTGATCAGGCCAGGATTTAAACCCAAGCAGCCATGGTATTCTGGGCCACCTGGCTTAGTCTCCTAGTAATTGTTCCTATTTCACAGTGAATGTTATTTTTGAAGATTAAACGAAGCAATCTATATATAAAACACAATACATACTCAATAAATACTACCTAATATTATATTTCTCCTTCTTAATGCTAGTGCATTAAGAAGGAGAAATTAAATTAATCAATTCAGTCGTGTCCAACTCTTTGTGACCCTATGGACCATAGGCTTCCCTACCCATGGGATTCTCCAGGCGTGAATACTGGAGTGGGTTGCCATTTCCTCCTCCAGGAGATCTTCCCAACCCAGGGATCGAACCTGCTTCTCTTACATCTCCTGCATTGGCAGGCAGGTTCTTCTCCCTCTTAACTCTTTCTAAAAATAAAATCATTGTGTCTAAGTGCTTTTCTGATTTGGGACATAGGTAGAAGTCTTTTTTTTTTTTTTTTAATTTTATTTTATTTTTAAACTTTACATAATTGTATTAGTTTTGCCAAATATCAAAATGAATCCATCACAGGTATACATGTGCTCCCCATCCTGAACCCTCCTCCCTCCTCCCTCCCCATACCATCCCTCTGGGTCATCCCAGTGCACCAGCCCCAAGCATCCAGTATCGTGCATTGAACCTGGACTGGCATCTCGTTTCATACATGATATTTTACATGTTTCAATGCCATTCTCCCAAATCTTCCCACCCTCTCCCTCTCCCAGAGTCCATAAGACTGTTCCATACATCAGCGTCACTTTTGCTGTCTCGTACACAGGGTTATTGTTACCATCTTTCTAAATTCCATATATATGCGTTAGTATACTGTATTGGTGTTTTTCCTTCTGGCTTACTTCACTCTGTATAATAGGCTCCAGTTTCATCCACCTCATTAGAACTGATTCAAATGCATTCTTTTTAATGGCTGAGTAATACTCCATTGTGTATATGTACCACAGCTTTCTTATCCATTCATCTGCTGATGTACAGATATAAAAATGAAACCACATTTTATTATGCCTTTTGCAATTCATTGGAAAGAAAATTACATTAAATTGGGACTGTCCTCAAAGATTTGAGACACGTGGCCTGCACAGTTCAAGGAGGCAGCATTTGCACGCCTTGCTGTGGGTTGGATGTGGTTGGTGGTTGTCACTCATCATGAAAGCCTCCTCTTGGAAAGACTGAGAGTCTTGCTGGAGCACAGCTGTCACCCAGGCGCATGCCCAGGGCTCCCTCTGCCCAGTGGCCACTCCGCCCCGATGTTCCCCTGTCTCTGCAG
Seq C2 exon
GTGACATTGGACCTGTCGCAGCACCAGGGCATAGCAGTGCGCAGGGTCCTGAACACAGAGCGTGACGTGGTGAACAGGTTTGGTGTCACCAACTTCCCGTCTTGCTACCTGCTGTCTCGGAATGGCTCCTTCTCCCGGGTCCCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014191:ENSBTAT00000018869:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development