GgaINT1023107 @ galGal4
Intron Retention
Gene
ENSGALG00000003933 | QSOX1
Description
Sulfhydryl oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8JGM4]
Coordinates
chr8:5971007-5971394:-
Coord C1 exon
chr8:5971304-5971394
Coord A exon
chr8:5971153-5971303
Coord C2 exon
chr8:5971007-5971152
Length
151 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GACGCTGGGTCCGCTCGCAGGTA
3' ss Score
7.7
Exon sequences
Seq C1 exon
TGCCGAGGAGGTTCGCAGCTTCTTCCACAGGAACACGGAGCGGTACCTGGCGCTGATCTTTGAGCAGAGCAATTCCTTCGTGGGCAGAGAG
Seq A exon
GTGGGTACGGAGAGGTGGGTGAGCTGTTCCCTTTGGGCACCTCCAGTGGGTCGGTCCACCCGGCATTGCCTTCTCCTCCTTGAACGAGGAGTGGGGACGATGGGGATGCTCGCCCATCCTCCCAACATCCTGACGCTGGGTCCGCTCGCAG
Seq C2 exon
GTAGCCCTGGACCTGCTGCAGTACGAGAACGTGGCGGTGAGGAGGGTGCTGAGCAGCGAGGAGGAGCTGGTGGAGAAGTTTGGTGTCACCACCTTCCCCTCCGCCTACCTGCTGCTCCGCAACGGCTCCTTCTCCCGCCTGCCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003933:ENSGALT00000006266:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGAGGAGGTTCGCAG
R:
GGCAGGCGGGAGAAGGAG
Band lengths:
234-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]