DreINT0123222 @ danRer10
Intron Retention
Gene
ENSDARG00000039459 | qsox1
Description
quiescin Q6 sulfhydryl oxidase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7019]
Coordinates
chr8:14506470-14506969:-
Coord C1 exon
chr8:14506879-14506969
Coord A exon
chr8:14506616-14506878
Coord C2 exon
chr8:14506470-14506615
Length
263 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTGTTTTTTGTTTTTTTAGGTA
3' ss Score
12.01
Exon sequences
Seq C1 exon
TGAGGCAGAGGTACACCACTTCTTTCCGGCCAACAATGTGAAGTATCTTGCTCTCGTGTTTGAGAATAAAAAGTCTTACGTGGGAAGAGAG
Seq A exon
GTGAGATCAATTTGCATAATGCTGATTTAGAGAAATAATTCACACAAAAAAAAAATGTAAATTTCCTAATTTATGCACCAAGCTTGAATTATTTTGCATGGAACGCATTTCTTCCAATCATCTTTTCAAAATTTGAAATTTATGTTGTTGTTTTTTTATTTATATATTATGTTAATTATGTTATTTTGTTAAATTTAATTTTTTTTGTTGATTATGATTTTTCTGTACAAAATATGTATTTAATTTGTTTTTTGTTTTTTTAG
Seq C2 exon
GTAACATTGGACTTGTTGCAGTATGAAAATATAGCTGTGCGCAGGGTTTTGGACACAGAGACGAATTTGGTGTCCAGGTTTGGTGTGACTGAATTTCCTTCCTGTTATCTCTACGACTCCTCTGGAAACATCACTAGGCTAAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039459:ENSDART00000057645:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCAGAGGTACACCACTT
R:
ACTTTTAGCCTAGTGATGTTTCCAGA
Band lengths:
237-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]