RnoINT0121277 @ rn6
Intron Retention
Gene
ENSRNOG00000003649 | Qsox1
Description
quiescin sulfhydryl oxidase 1 [Source:RGD Symbol;Acc:68957]
Coordinates
chr13:73437440-73441474:-
Coord C1 exon
chr13:73441384-73441474
Coord A exon
chr13:73437586-73441383
Coord C2 exon
chr13:73437440-73437585
Length
3798 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACACCCTATTGTCTCTGCAGGTA
3' ss Score
11.38
Exon sequences
Seq C1 exon
GCTGAAGGATATCAATGAATTCTTTACAAGAAGTAAAGCAGAGTACCTGGCCCTGATCTTTGAAAGGGAAGACTCCTATCTGGGTAGAGAG
Seq A exon
GTGAGCTGCCCCAGATTTCCTGACTCTCAGAAGAGACCATGGGGAGAGAGCCCTGTTCAGACCAATGCAGGCAACTGATCCCTGTACATTTATTAGCCAGGCACTGCCTGACCCCTGGTGAGACACATGGGAAGTGTGGAGGTTCCTTTCAACTCTAAACGTTGGTATCTGTTCTTACCTCTCTGAAACTAAAAAGTAATACCTGCTAATTACTGAGTCTAGATACCACTAGATACCAATACATGGCTGCTAATCTCTAAACTTAAGAGAGTGGCGTAAAGTGTCTAGGATCACACAGCTGTTAATGTAGGACACTGCTGCTTGACTCAAAACATGTGTTGCTCTAACTGCATAGAATTGGGGTTTTTAAAAAATGGGGGAGCAGTCACATGAGAATTTAGCCTGGTTCCTTGTGAGGAAGTTGAATCTCTGACCAGCAGTGCAGGCTGGACTTCTCCATCAGCTTGAAGAATGTCTTTGGTCAAGTTGCTCAACCGTCTGAGCCTTATTTTTAGCTATGGAATAGAAGTAGTTATACTTATTCATATTAGAATGCCCACTGAGGCAGTCTATATACAGAGCTGGAATTATGGCCAGCATGCAGTAGGTGCTTTATAAAGATTCACTTCTTTGCTTGCTGTAGAGAGCGCCTGCTATGCTGCTGGCCCATGGGCTTGGTACAAGTGACGTGGTGTGCCCATGCTTGTTACATGTTCCATGACAAACACAGATGATTGACAGGTGCTGATTAGAATCAGTTCTTCCCTCCCCTGACACAACATGGTACTGTTCTATACCTCACTTCCTCAGCTACAGAGTAGGATTCTGCTTACTATCACTCTATTCTCTTTACAGATAAAATTTAGTTTGTTAAGATAAGTTCCACATAATTCAAGCAGGCCTCTAACTCACCAGGTAGCTGAAACTGGCTGTCTTGGTCAGTGTTCTATTGCTGTGAAGAGACACCATGACCAAGGCAACTCTTAAGAAGAAAAAAGTATTTCATTAGGTCTGGCATACAGTCTCGGAGGTCCACTGTCTTCATGGTAGTGGCGCATGCAGGCAGTCATGGTGCTGAAGTAGTAGCTAAGAATTCTATATTGAGATCCATAAGCAGTAGGAAGAGAGAACCATTGGGCCTGGCTTTGACTTTTGAAACCTCAAATCCCACCCCCAGTGGCGTCTTCCAACAAGGCACACACCTCCTAGTCCTTTCAAATAGTGTCACTCTCTAAGTATTTAAATATATGAACCTATGGGAGTCATTCTCACTCAAACCACCACATTCCACTCCACTCCCTGACCCCCATAGACTTGTAGCCATGTCATAAGGAAAAATGCATTTAGTCTGACTTCAGAAGTCCCCATGGTCTTTCACAGTCTCAAGACTACTAAAGTTCAAAGTCTCTTCTGAGACTCCTGCAATCTCTTAACTATAACCCCCTGTAAAACCAAAATCAAAAGGCAGATCATGTACTGCTAACATACAATGGCCCAGGGTATGCATTACCATTCCAAAAGAGAGGAAAGGAGGAAGCATTGTGAAGATATGCTGGACCAAAGCAAGGCACAGACCAGCTGGGCAAACTCCAAACTCTGTACCTGCATGTCTGATGTCAAAGGCTCCTCAATAGGAATCCCACAACTCTGGTATCTCCAGTATCGTGAGGTCTCCAACAGATTTACACAGTGGCCTCTCAGCTTCCATACAGGAGCACTCCTAAGACATACCTGCCCTCAGTGGCTTTCTGTAGCTGTAGAGGAAGATTCTACAACACATGCCTTGCATCCTTGACTCTAAAGCCAGAACCAGAAGCTACGTCCTGCTGTGTGCTGGGGCTGGAACCTGGCCCTTGTCCAGTTACATTCGCATCAGCTTTCTGTCTTCAGGTGGTCCCTGCACTGCTTGCCTTCCACAAGTTGGAAGCTTAGCTGGGTGGGTCTTACTCTGAAGTATGCACTCCCTTTGCTCCATTTAGTGTTTCTTTAGACTTTGAGCACTCGACTTAGCTCTATTCTGTTCCCTGGTGCTTCTTTTATCCACAAAGTGTACATTTTGTATTTTGTAAATTTTTTTGTGCTCAGTTTGCTCCTTTTTCATTATAGACCTGCATAAGAGTGACTGCTAATAACCACATGACAGAAACAATGAGGCTGTCTTGAAATCTCTGCCAACGTCATTAATCCAAAACTTGTTTCAGAAATCCTAGGTAGATTGGACAGGGCAGAACACAGCCACACTCTTCATCAAAATACCACAAGAGTGGTCTCTGGGACACTTACTTTCTTTGAAACCTCTTGAGCTAGACTGGCATTATCTACATTGGTCTCAGCACCAGCGCCTTACGTGCTCCTAGGATGGCCCACTAAACCATTTAAAGTTCAGCTGCTTTCCTAATTGAAAGTCCAAATGTCCACATTCATCCAACAAACAGCGTGGTTGGGTCTGCCCTGCTCCCTGGTACCAACTGGTGACCACCACATGGCCTGAACTCATGATTCTCTTGCCTGTGTACTGCAATATCTGTTGTGTACCACCATACCCAAGCAGTATTTTCCATGTAAATGTGTAGTGTATATGCGCATGTGCACATGTGCATGCGTGCGTGCGTGTGTGTGCATGTGTGCGTGTGTGTGTGTGCGCACATGTGTGTGTTTTCAGTCTGGCATCTGCATGCCACAGTGCACATGTGTAAGTCAGAAGACAACCTCAGGTGTCAGTTCTTACCTCTGCTTTATTTGAGGCAGTATCTCTTGTTCACTACTGTGCATGCCAGCCTTGCTGGCCTGTGTGCATCTAGAGATTCTCCTGTCTTCACCTCCCAACTCACCGTAGGCATGCTGGGGTTACAGATGCGTGCTATCACCAGGTTTTACATGAGTTCTGGGCATCCAAAACCAGCATCACATTTGTGGAAAAACACTTTATCTATGGCTCCATCTCCTCAGCCCAAGTTATATATTTTCAATAAATAACAAAGATGTCTGCCACGTGCTGGCCACTGTTACTAGCATTTTAGTAAATGTAATCAGTGAGTCCACATAACGACGGCCTCCTTTTTGTTACTGTCATCATCATTATCACTCTGTAGGTCAGGGAGTTGAGTGGAGGAAAGATTGGGCCTGTGAAGTTAGGATTAGGATTCTCCTGCTGCTGCAGCCATGGTATAAAGGCCCTAACAAGGGTTGCTGCCTCAGTGTTATTTTGGAGATTAAATGTGGCATTCTAATATAGGATAGAACACATAAAAATTATTGTCTGTCTAACCAATATATTTTTTTCTGACCTAGGAGAGATTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTTTGTACACATATAAGAATAAATGGACTGGAGAGGTAGATCAGAAGTTAAAAGAACTAGCTGCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACATGGCAGCTCACTCACGTGTATAGTGGGATCTGATACCTTCTTCTTATGGTGTGCAGACATTCGTGTAGAACAAGCACTCATACATGAAAAATATACACAAATACACACAGAACAAAAAGAATAAAAATAAACCCACATTGTACTATGCTTTACCATATTCGGTTGGTACTCCTGTATGATACACAAAGTGTGCGATCTGAACCCGTCCAAGGCCCCTTGCTTTGGGCGGTATTTGGTAGTTGTAACCTGAGGGTGGTATGAACTTTATCACAGTGGTCTGCTCTGCAAGGTTTCAAATCTAGCTAGAACACAGACCGCTCTGCCCGCTGGGCGTGCCCTCCACACCCTATTGTCTCTGCAG
Seq C2 exon
GTAACTCTGGACCTGTCCCAGTTCCATGCTGTGGCAGTGCGCAGGGTCTTGAATTCAGAGAGCGACGTGGTGAGCAAGTTTGCTGTCACTGACTTTCCATCTTGCTACCTGCTGCTTCGGAATGGTTCTGTTTCCCGAGTGCCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003649:ENSRNOT00000005052:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]