GgaINT0038184 @ galGal4
Intron Retention
Gene
ENSGALG00000005203 | OLFM3
Description
olfactomedin 3 [Source:HGNC Symbol;Acc:HGNC:17990]
Coordinates
chr8:10462129-10464048:+
Coord C1 exon
chr8:10462129-10462146
Coord A exon
chr8:10462147-10463901
Coord C2 exon
chr8:10463902-10464048
Length
1755 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAAC
5' ss Score
-4.52
3' ss Seq
ATTACTGTTGTGTGTTACAGACT
3' ss Score
9.03
Exon sequences
Seq C1 exon
AACTCATTCACTGGTGTA
Seq A exon
GTAAACCGAATGCAGTAAAATCTAAATATAGATTTTAACACAGATATCACAAATATCACAATCTATGCACAAATCATATGGAGTATTCCTGTCCTATAGGACTTACCACAAACTCTATGTTCCTGAACTCCAACAAAACTTGCTCCTGCACGACCACGCTGTCTGGGCATCAGTTCTACACAGAAGTGTAGAAACTTGTGGAGTTAACATAGCTTACGCTTTGCAAGGGTTACTAGATTTGATGGGCTTCAGCTGTTCCAGCCTGCAGTTTTAGTAGCTGCTCAAAACCAAATTAAATTACATCTCCAGCTGTAAGTTTGTTTGATTCTTATTTTTGTATACATGTTAAACTAAATTCCTTTTGCCCTAAAAATTAAGTACATCATAGAAGTGGAACAATTTAGCACTGGATATGCCTTTCTAGCACATTCTAGGGCAAGTTTAGCTGTCCCCTATTTACAGTCATCTATGTTATGATACCTTCTTTTTCTTGCAAAACAGAGGAACAATACAACTCTGAATTTTTCACTAAATTCCACAGTAAAAGATATCACTGCTATCTTCAGTGGCTTCCTCACAAGAGTCACTGTAAGGAAAAAAGCTTGCCCTCTAACATTGAACCAATTCTCAGAAGACTAATGCTACCTTCCCTACTAATTTCAGTCTACAGAGACACTGTATGTTTTCTGAGGTGAGGAGTTATGCAACTCACTCCTCGTTATGCATCAATAGAAGCTTGCCGGTTTTAATTATCACTCTCCATGCTGACAATTAGTGTAATTTTATAGTATAATTAGTAATTGATTCCAACTATGTCCAGAAATATTTCAGTGCTATCCATTAGCAACTGTACTATAAAATTCAGTCAACAATTTTCCTATTATTAGGAAAAGGTAATGCTTAATATTAATTTTAAATTATAGATTGAAAAAAGACAAAAATATTTCTGGTGTCCATTAGTCTTCATTCCCTCACCTGAGTTCAGTCATCTAATTACATCACTTAGTCTCATTCCAACACTCTACGACTTCCACAAATCCCATAAAACATACCACTCTCACAAAGTACCACCCAAGCTTCAAAGGCATTTTAAAAGAATGCTAGGAATTTCCAGAACTGTTCTGTCCTAGTGAAGCACAGTTCGGTGTCTTAACTGTATTATGCCATGCCTGCCATCATCTCCTTCTATCTAAATTAACTGGCACTTCTCAGCACTGCCCTGCAGCAAGCCTTCTCCCTTTAGTGTAAGCACAGCCGAAGTCAATGAAGAATGGTTTTCAGCAACTTTAAGAGCAAACTTGCTAACCCCCATCCAGAACCATTTCCAAGCCATCTTCCTTTTGCATGACTCACATATACTGCGCTCTCTCTTTGGGATTTTATATTTGTTCTTTTCTGTCTTTGTTGTTTCCATTAGTCTAAAGTAAAAGTCATTCAGGCTGAAAGGACATATTTGTTCTCTGTTAATGAAAAACCATAACATTGCTCTGCAAAGAATTAAATCAACCAGCTTGTGCTGAATCCCAAGCAGGAAACTGTTCTCATCCATACTGCAAACAGTGCTCACAGCACACTGCCAGAGAACTATTACAAAACTGTACAAAATCACGAGTATAAATAGTTAAGAGAATAATGAGCAATGACTATAAGGAACCTCACTGCAAATATATACTGCAAAAGTAAACCAAAATAGGTAGTGTTTTCAAACAACAGTTCAGTTCTTTTCATTTGTATTATTACTGTTGTGTGTTACAG
Seq C2 exon
ACTCAGATTAGCCCCAAGGAAGGGTGGCAAGTTTATAGTTCAGCCCAGGATCCTGATGGCCGCTGCATTTGTACTGTTGTTGCACCTGAACAAAACCTGTGTTCAAGAGATGCCAAGAGCAGACAGCTTAGACAGCTGCTAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005203:ENSGALT00000008354:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123083=Noelin-1=PU(46.5=95.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]