GgaINT0038300 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6316440-6319520:-
Coord C1 exon
chr8:6319376-6319520
Coord A exon
chr8:6316601-6319375
Coord C2 exon
chr8:6316440-6316600
Length
2775 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTAAAACTGAACTTTTTCAGAAA
3' ss Score
4.51
Exon sequences
Seq C1 exon
ACTCCTCCCAAAAGCAGCATATCTGTATCAAGGCAAGATTCCAGCAAGGGCAGCCATAGAACTGGGGGACAGCTCCGTTCTCCTGTGAAGTCTCATCAGATATCTCACAATTGGTCTGATGAGTCTTTATCTATGACACAGTCAG
Seq A exon
GTAAGTGTAATATTTGCTTGGATTTAATCTGTTGTTTCAAAGCTAGTCATTTTAATAAGTAAATTTGCAAAGCAGACCTAGATGTGGGAAAGCAGGCAAATTCCTGCAAAATGCTGGGTTTGGAAGTTCTGTGGGAGTATTTTCCCATGATGTAATTTGATCATTTCAGCATAAGAAGGCCCATATATCTTTGCACAGATTCCTGCAAACAGTTGTGAAGAAGAGTCAATAGTTAAGCTGTCTAGAATTTAAGAATACTGAGGTTGGCTGTGCTTTTAATAAATGACACTTCTTTGCGCCTCTCATTTTAAGAAAGCAGAATATGGTTCAGCAGCATATAAACATGCTTGTCTTCCTTCTGAACGCAGCCTGGCTTCAGAAGACAGATAGCCCTGTTTATCATAGCAGTACAAGTGAGCCCACTGGACCTACACTGGCATATGCATGGCAGTTGGACATTTCATGGCATATCCAGCATGACTTTTTTGTGGAGGAGAGTTTAAATTGTGTGCAGTAAAATGGGGCCTAAGGTTGTGTTTTGAGCTACAAGTATAACATCTACTATACAGACTCCTGTCAGAAGTCTTTTAACCCAATGTTCAAGTGGGCTACCAATAAATACATGGAGAGAGATGTGTATACAGAATGAACTGGCACAGGGCGATCCTTTCGCTGATGTGCTCTTGCAGTCTATTAGTCATGTAGACTTCATGAGCAGCCGTAATCCTTGGGATCACCATCATAAGCTCCATTGATCTGTGAAGACTATTTTGAACATTTCTCTGCTTTTAGTCTCTGAATTCTTGTTTGCATTCTGGAGGGCACTTTGCAACCCAGTGAAGCATTCAGCAAGTTGATAAACCTATCTTCAAGTTTTGACTGAGGAACCATATAAGGAAGCCATTGTGAATAGTATAGCATGCAACATGGTCATGAAAATAAAGTCTTCGGTCTCAAATGCTAGAGAGAGATGGAAAAAAAGGGGGAATTCCATCAAGGTGGTGCACGTTTCATAATAAATCATTCAATTGAAAAGAGGCAAATCTTCCAAGCTGCTGAGTAGTAGTGATGTCATTGCTACGTCCTGATGCATGCAAAGACAAGCTTGTCAAAGATGAAAGCATGCGCAGTTTTTTCTTTAATGAGTTGATCAATAAAAGCTATAATTACATAATGGTCACTTAGCATTCAGGAGGAGTTAAGTACAGTGGCATCATAAAGTACTTGTGATTAGCAAGTGAGATTCCATTCTTTTCATGCCTTTTTTTTCCTTTAATTCTGTAAATGCTGCTAACAGTTGTTAGTGGAAAAAGAATACAGTAATGTGTATTTGCTGGCTGTTGATGAAGTCCTTCTTGATTGTTGTCTTGTGAAATGAAATTGACTAGCAAAATGTGCTGACTAGATAGTATGGATAACTTATTTCCTAGGACCTTCAGTAGAGCAGTTGGGAGTTCATGAGCATGCAAGCCTCTTGTCTAGAAAGCAGCATAGGTAATGTCAAGCATCAGAAAAGCGGACCAGCCTAGATCCTTCTGTTTGGAACTGCTGCTGTAGGTGGAAGATGAGGGAGGGCATCAGGCACCAGGGATCAGCTCCAATAAGACTGTGTCAGGTTAATATTTTGAACAGCTTCTGATATTTATTTGTATTAGCACCACCTGGGGCTTGGATCTTGTTTTGCCCTATATTGGTGTATGTTTAAAAAACAAGGAACTAGGTGGACACGTGCAGGTTGTTGGGGAAGAGTAAGTACTGAGATACCTGAGGCAGTCGCTCTGTAAGTCTTGAGAAACCAAGAGGTTATTGGAACAGAAATAGTGAAAGTAGCAGAGATAAAGATGGCAGTAGCAGAGATGGTAGAATGTGGTTATACTGGAGTGAATTCTGCACTGAATCTAATTAACGGGAAAGTGTTCCATGGGAACAGAGGCAGAAAATCGTCGATGGGATTGAAGACCACACTGCAGGGGATGGAGAGGAAAATGATTAAGAAATAAAATGATTAGGTAGAAAATGGCTGTAGTCAGTAATGGCATCTTAGGAAAGTCTGTGAAGTTGAACTTGGAGCAAGGATGTGCCTCATAGCGTTGTGTAAGCAGTCGCTGAGTAGTCCACTAGATGTCTAAGCTCACTTCTACCCACTTCACTCTGAATAGTATGTCACCCTGAGGCCTGACAACGGTGAAATCTGTGTTGTTCAAGTTGGCTTTCCTTCCAGCTGTCAAACACTCAGCTATCCACTTCATAGATGTACTTAGTTGAGGTGGCAGAAAATCTAAATTGTCTGGAAACATAATCTGCTTTTGGAGTCCTCTGCTTCAAGAAAAATTCTTCTTAATAAAGTGTACCTTGTAGCTTGAAATTTTGCATGGCAATTTTAAACATGTATTTCAGATACGTTTTTGGTATACATCATTGGGTTGTTATATTTTTTAACATGTCAGCAAATTTTAATGTCTGCAATAAGCTGTTAATGAGATAGTCGTGAATGCGGGAGAGTGATATGTGTACCAGTTTGCTAGCAAGTTACTACATATATCAGAACATCTTTCTTGTCTAAAATAAGATGCAGTGCTTTTTCTTTCTTGTGTTGTACAGTAGTGTTGTGAATCTAAGACTCCATTTGGAGTCCTACTATGTTGAAATCAACATAATTTTTTCAGTGTTTCACTTGGACTGTATTTTATATTTACTCTATGACTATTCATTGCTTTGCATGGGACTGTTTTTTAATAGGCAAGTTATTTAAAGGCTAAAACTGAACTTTTTCAG
Seq C2 exon
AAACAACTTCTGATCAAAGTGATATTGAAGGACGCATCAGAGCCCTGAAGGATGAACTACGGAAAAGGAAGTCTGTGGTTTACCAGCTGAAAAAGGAACAGAAAAAGAGGCAAAAGGAGAGACTGAAAGCCCAGGAGGCCAGTCTGATCAAACAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]