HsaINT0033807 @ hg38
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180080517-180084178:+
Coord C1 exon
chr1:180080517-180080661
Coord A exon
chr1:180080662-180084017
Coord C2 exon
chr1:180084018-180084178
Length
3356 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AGATTTTGTATCTCTTTCAGAAA
3' ss Score
8.63
Exon sequences
Seq C1 exon
TCACTTCCCAAAAGCTGCACATCTGTGTCAAAGCAGGAGTCTAGCAAAGGAAGTCATAGGACTGGAGGACAATGTCACCTGCCTATCAAGTCCCATCAGCACTGTTATAGTTGGTCAGATGAGTCATTATCTATGACACAGTCAG
Seq A exon
GTAAGACTAATCATGAGGAGTTTTTATTTGTGTTGTATTTGAACAGCCTTTACTCTAAAAGGCTTCAAGGAGTTTGTTGACCTTAGGAAGCATATGTAGACAGACAGTGGTGAGTTTATGTAGGATTGTGAAGAAGATTAATACCATATTGAATATTGCCATATTGAATATATCGAGTTAGGCATATTCAGTGTATTGCTTTTTTTGTTATTTTTTAAGACAGAGTCTCACTGTGTCACTCAGGCTGGAGTGCAGTGGTGCGATCTTGTCTCACTGCAACCTCCGCCTCCCAGGGTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGAAGCTGGGATTACAGGCACCCGCCACCACGCCTGGCTAATTTTTGTATTTTTTTTTTTTTAGTAGAGACGAGGTTTCACCACGTTGGCCAGGCTGGTCTCAAACTTCTGACCTCAGGTGATCCACCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCGGCCCACTGTACTGCTTTTTGAATTCAGTTTTAGTTTTGAGAGTAAACATTTAGTAAACGAAACATGAAAATTGTTATTCTTTGGGTTTTTTTTGGTAATTAATTATGTGTTGTACCTTTTTGTTTTCCATGTGTCAGACAATTATAAATCATGGAATTTTCCTACACCCATGTTTACAGCTCTTCTTTCTTCTTTGAGTAACTATATAATATTTCAAAGAGTAGATGTACCATAATTTATTTAACTGTTTCCCTAGTGATGGCTATTTAGATTTTCTTAAATATTTCACAATTGCAAATAATGCTATAATAAACATCTTTATTTAAAGATTTACACACACATATGTATGCAGTCATGCATCACTTAACGTCCAGGATATGCTCTGAGAAATGTGTCATTAAGCAATTTCATCATTATATGAACTGCGTAGAATGAACTTAGGCAAACCTAGATTGTGTAGCCTTACTGCACTCTCAGGACATATGGTATAGCCTCTTGCTCCTAGGCTGTAATACCTGTACAGTATATTACTATACTGAATGCTATATGCAGTTGTAACACAATGTTAAGTATTTGTATATCTAAACATAGAAAAGGTGTAGTAAAAATATTATGACTCACATGTGTATGTGATATCATATATCATTTATGTGTGTGTTTATCATGTATAATAAAAATTCTTTTTGTATATTTCAGTGTGGAATAGATTCTTAGGAATAGAATCATTGAGTCAGGCCAGTTGAAGAAAGTTGTCTCATATTTCTCTGTGGAAATTTACTAATGTTTTTATATATTTGCTTTTATGTACGTTGGTGAAAAATTACTTCCAAGAGAATAACATGTCAGTAGACATAAACTTGAATACTTGGAAACATGGGTTCTTATCCTGGATCTCTTACTTACCGGTGACTTTCTTCAAGTTTCTTTGCCAATACTGGATTATCTTTTTCATTTGTTAGCAATGGAATAATGTTTCAACCATCCTTGCATGAGTTATGCACCAAGGATTAATAATAACATTTGTAAGATACTGTTTTATTGGTGACACTTATTTAAGTAAGAATAAATGGTTTTAGAAAAGTAGCTCTGAGGTTTCTAAACTACAGATTCACTACCTATTCAAGATGACATTATTTATATTCAGTATTTGTAGAAGTGGTAGATATTAATGTAGTAGAGTTATAATACCTTTACTTAAATGATGGGAGAGTTTATCAACCAAGCTAATATAATCAGTGTGTGTCAAATAATCAGAAACTCCCGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCATGCTGCCACACCTGGCTAATTTTTGTATTTTTGGTAGAGATGGGGTTTTGCCATGCTGCCCAGGGTAGTCTCAAACTCCTGACCTCAAGCAGTCTGCCCACCTTTGCCTACCAAAATGCTGGGATTACAGGCACGAACCAGTGCGCCCGGACTGCATTTGGTTTCTTTAGTACTTAAAAACATAAACATTTTCCAAGGTCTTTCATCTAAAAACCCCAGGTTTTTCATCACCTGCTATTAAATCTTCAACCATAGATGGTAAATATATTTTTTATTGAAAATCACTGCTGGCATATACAATTTTTAAAAATATTAATTTAAAATAGTTATTTTGGGGGCAAAATTGAAACTAAGCCTGTAAGAGTGTAGTGGTGTACAAAATCTTACCAAAATAATAATAATTTTGGAAGCACATAAGTAAATATTGAGCCTTGCCTATGCTAAGGACTCAGTATGATGCCACCACTAATATAAAACAAGCCTAACTTTCCTAGTATGTCTTAACTCAGTGTCATAGAAGTGACAGGAACTCAGATTTTATTATTTCTTATTCAGACATTTAGACCACACTATTAAAAAGACTGTAATCTTTTTGCATTTAAATAACTTCCATAACTAGCTCTTACACGGTTTAATCTGAAGTAACTGATAAAATCCTGGTTTTTGATGTGATGTTAAGTCTTAAGATTTGTGTATATTATTTCTGTTGTAAGACTATTAAATGTCTCACTCAACATTAGTATATGGAAATGACACCATTGTGTGATTGAGGGAGGTGTGAGGAACAGTAATTTCTATCCTATGTAATTTCCATGTGTAGTGAAATAAGCAGTGTCTTTAAATGATACCTGTTTGTTTTCATAGCATGTGTATGACACATTATAATGAAATATCTTTTTCATGATGTTGCTATGAGTAGACGTCTTGTGTATGTGAACTGTTGGAGAGAAAAGATTTAACTAGCTTCATTTCAGTTATTTTAAATATTTTGAGAGCTTTCAAAGAGAGATTACAGCAGAGTCTATTTCTTTATAACTTCTCTCTTTTTAATGTGGTATTAAGCCATCAGGGAATGAATCACAAGCAATTTGAAGTGGTAAAACTCTAGTTTGATTTTAATATGACTTAAAAACTATTAAATTATGTATTAATAACTAAGGCAAAAGACAGTTAAATATGATTATCTTGTTACCAGAAGTAATTTCTTGCAGAATATCCAAATTTCATCAATCTAAAAATTTCTCAACTTCCAGCTGCATGTCTTACCAAGACAGCGTATCTCAAGATTTATTTATAATTTCAAGTAGTACAATTAGAAAGTGAAAATAAATAGGAGGAACCAAGCCAAAAATAAAGTGTATGTGGCGGGCGGCGGGGAGGGTGGGAATTATAGGGATACATTTTAGTAATAAATCTTCTTCCGAAGCTCATATTTTAATTATTAGATTGGCTTTATTTAAATGGAATATTACATTACAGCTTTTTATTAGTAGTTACTGAGTTAACATTATTCTTAAGTCAAAATTATAAATAAAAGATTTTGTATCTCTTTCAG
Seq C2 exon
AAACTACATCTGACCAGAGTGATATTGAAGGTAGGATCAGAGCTCTGAAGGATGAGTTGCGGAAAAGAAAATCAGTTGTGAACCAGCTGAAGAAGGAACAGAAAAAAAGGCAAAAGGAAAGACTGAAAGCCCAAGAAGCCAGTCTGATCAAGCAGTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837:ENST00000367607:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=0.897
Domain overlap (PFAM):
C1:
PF093675=CpeS=PU(48.9=89.8)
A:
NA
C2:
PF093675=CpeS=PD(50.0=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development