GgaINT0038535 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:3730893-3731441:+
Coord C1 exon
chr8:3730893-3731262
Coord A exon
chr8:3731263-3731333
Coord C2 exon
chr8:3731334-3731441
Length
71 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACGATGGTCAATGTGCGCAGCCT
3' ss Score
2.86
Exon sequences
Seq C1 exon
CAGGTGGGGGCCTGGACGTACAACTACAGTGAGAAGGACTATGAGTGGGACGAGGCCAGGGCATACTGCAAGACGTTCTTCACCGACCTGGTGGCCATCCAGAACAAGCAGGAGATCGAGTACCTCAATCGCACCCTGCCCTATCATAACAAATACTACTGGATTGGCATCCGCAAGCAGAAAGGTACCTGGACCTGGGTGGGCACCAACAAGACACTGACGAAGGAGGCAACCAACTGGGCCGCTAGGGAGCCCAACAACCGCGGGTCCAACCAGGACTGCGTGGAGATCTACATCAAGCGGCCGTCAGAGGCAGGCAAGTGGAACGATGAGCCTTGTACAAAGAAGAAGAAGGCGCTGTGCTACAAGG
Seq A exon
GTGAGTGTTGAGAACACGGGGAGGGCTGGGAGCAGGGCAGAGCGCCCCTTGACGATGGTCAATGTGCGCAG
Seq C2 exon
CCTCCTGCCAGCCCCTGCTCTGTGGTCTGCACGGTGACTGTGTGGAGGTCATCCAGAGCTACAAGTGTGAGTGCCACCCCGGCTTCGAAGGGGACAACTGTGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643:ENSGALT00000004163:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=WD(100=91.1)
A:
NA
C2:
PF0000822=EGF=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTGCGTGGAGATCTACA
R:
GGGTGGCACTCACACTTGTAG
Band lengths:
175-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]