HsaINT0147177 @ hg38
Intron Retention
Gene
ENSG00000174175 | SELP
Description
selectin P [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr1:169613586-169617414:-
Coord C1 exon
chr1:169617028-169617414
Coord A exon
chr1:169613694-169617027
Coord C2 exon
chr1:169613586-169613693
Length
3334 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
ACCTTTCCATATCTATGCAGCCT
3' ss Score
8.02
Exon sequences
Seq C1 exon
AACTAACAAACCAGAAAGAAGTGGCAGCATGGACTTATCATTACAGCACAAAAGCATACTCATGGAATATTTCCCGTAAATACTGCCAGAATCGCTACACAGACTTAGTGGCCATCCAGAATAAAAATGAAATTGATTACCTCAATAAGGTCCTACCCTACTACAGCTCCTACTACTGGATTGGGATCCGAAAGAACAATAAGACATGGACATGGGTGGGAACCAAAAAGGCTCTCACCAACGAGGCTGAGAACTGGGCTGATAATGAACCTAACAACAAAAGGAACAACGAGGACTGCGTGGAGATATACATCAAGAGTCCGTCAGCCCCTGGCAAGTGGAATGATGAGCACTGCTTGAAGAAAAAGCACGCATTGTGTTACACAG
Seq A exon
GTAGGGCCTTCTCTACTTTGAAACTTTCCTGTTAAAAAAAAAAAACCCTGCCTTCTCTGGTTGGCCAACATAACCACCGAGTCAACACAAAGATACAAAGGCAGGACATGAAATCAAGGGGTAAATTGTTAGTCAATCAGTATTATTGAGCACCTTGAAGAATATAAGATCAGAATTAGAGAAAACTAGCTGCTTAAAACTAGAGGGAAATTTTAATATCATCCAGCTCACCTGTCTCATCTTATAACTGATGAAAAGGACACTCACGAGGTTTTAGTTTCTCAAGGCCGTGGAGCAGGACAGAAGCAAAGTGAGGACCAGAAACCAGTCTCCCAAATTTTAGGTGTAGAGCTTTTTTTTCACCCCTGTGTCTTGTATAACAGAGAGTGTAAATTGGAAGGAAATTTAGCCCTGCCCCTAGGTGACACAGCTGTAACTAATAGCTACTGAATGTCAGTATGCTCTAGGCATTGTGTTATTAGTTTATTTAGTTCATGTGTCATTTGCTCATTTAATATTAGTCAAATTTAGTCCTCATGACAACTCCATCAGTCAGGTTTTTCTATTACTCTTACTTTGCTGATGAGGGAAAGGCTCAGAGCTATTAAGTAATCTGCCCAGGGTTCTAAGCTAGTTGATGGTGGAGCCAGTTTCACACTCATGTTGATTCCAAAGTTGGTGTTTTTTAGCCATGTAAACTACCACATTCTTTGCTCTACATTTTTATGAGACAATTTGAGAATATAACCAAGGATTGTAAATGCTTTATAGTTTCTCTTCAACAACAACATATCTTTAGATCCATTGAACTTTGGTGGGAGGGTAGTGGTGGGGAGTGGGCAGGAAAGGAAAGAAGTAATTGAAGGTGAAATACTTCGAGTGTATTTTAATTCTCAACTTTACCAGTGCCAGAGTAAGCAGACATTCCTGAAAGCTTGGTCTTCCTCTAGTCACGAGCCTAGTGTCAGAGCTGATTCCTTCTTTCTGATGTTGCTTCCCTGTCCAGAGGGGCCGGTTCTGTCCTTTGTAGCACACGAACACTGTGCCTAAGGATGGTATGGACTGCCCCGAGCAGGAAGTTTCTAAGTACTCTGAAGCTTCTTTGATAAATCATCTGCCATACATATTCTGAATTCTTTAGATTTTAAACACCTCTCCCTCAGAAGCCCTCAACAGTACAGGTATGGAACAGAATACACAGAATAAAGCAAGCCTTCTACATTGTCCCTCTTCTCCCCAAGCCTCCTAGCTGAGGCAAAACATATCCATGAATGCATTATCATATAATCAGATCTACTTTATAAATAATGCATTTATATATAAATAAATTGATTAATTGAGCATATATTCATGGATCAGGATGGACATTACCAGGATATTAGCTCATCCTACTGCTCTCCCAGTCAGCTCTCTACCCCTTTCTGGGCTATGCCTCCCTAGAATTATCTCTTATCAGATAACCTTGACTGCCACTAGCTGTTTCAATATGCCACTACTTCCCCTTCACACCCAACCTTCAAAATCCATTTCTGCAAGACAGTCTTCCTCAATAAAGCTTGCCAAAAAAATTGCAAGATAGAAAAAAGATAAAAAATTACTGGCATAAATGATGACACTCCTCTAACCCACAACAGTGGTAGAGACATCACTAATTAATACAACTTTACCTGAACACAGATGGGTTTTATCTCCACCAACACAGTACTCTAAGCAGCCACTACCATTGATTGTCGTTTTGCCATCTAAGATGTAAAGGATGTAGAGAAGCATCAATTATCCATGGGAGATGAGAAATAGATATATTTACTGTAATATGAAATTAAGTTTGATTGTTGGAATAATTCTCCACATGTCAGGAATTATTAGACCTCAGAGCAGGCTATCGAAAAAAGATTTATTCATTGAATCATCATGAATAAATCATCTTCTCCCTGGAGATCCAAAGGAATAGACAAATTGCTAACCTATCTATTCAGGAAACCCTGAAATGGGATAGAATACAGAACATTGTCTCTTTTTTTCCCCTAGAGTTCTGAGATCCCAAGGAAGCTATAATTGGGGAAACATTTGTATGCTCCAAGAACATAGGGCAGGCAGGGGTTGCTACTGTAAGGTATTAAGACATTGGTGGGGTTAAGGTCAGGGAGCGAAGTGAATAGGATGTGGACCAAACCTGTATCCATTTAGCTGCTATTGCCTCCTACATCTTCTCTTTATTTGAACCCTTCCCAGTGTCTCAGTGCAGCTTCACCAAATTCACTGGCTGCCACAGGAACTTCTTCCTATAGAACCTTGCATGGTTTATAGAATTTTAGTATCTCAGAATTGAGAGGAAACATAGAGATCATGTAGCACAGCATATCCACATATGACATATGGATATTCTTTTGTAATATACTTCCAAGTGAACCAGCATGTGGACAGGGCTTAAGACAGAGGAAGTAACCACCAGAAAACAGTTCAGCCATAGAACTTACCCCCAACTATGACCTCATTAATAAAAACATCTCAGTGCTTTGAAAGTATCAATTCTAATACTAATTCTCATCAAGTGCATATACCCTAAAATACTTTCTTGCAGGAAAGAAACCATGGCCCTTCTCTATTCTGTCACCTGAGTGGCACTATCTTGGTGAAGAGGACATGGCAGTTCAGCCATAGTCAGTACTCTCTTCGCCTGCTGTATTCAGACTCATGAAACATCACCTCATAAGATTGTTTGTCCTTTACCATGAGTACGTCTTAAACATCTCATTTGGCTCCTCTGTTTCTCCACTGTAGGATTCTGGACATAGATTTGAAGCAAATGAAAGGTGAAAGGGTTTGGGCTCTAACACTGTGCAAGCTGAGCTCAGAGAAGTAACTTGCCTAAGGTCACATAGCAAGTAGGCAGCAGAGCCAGGATTCATATCACACCTGTGTGACCCCACGCCCCACATCTGGTGCCTAACCTCAATGCAGTAATACGTGACATTGGGCTTCCATAATAAAACAATGCTTGGTTTGAAAACCACAGCCCATTTTGTACCACATAGGGTTTCTCTGTCCACACATCTGTCATTGGCTCCATTTGTCCCTCTGTGTCCACACACAACAATACCCTCCTTAGGAAATACTAAATGCAGTATGAAATGGGAGCCACGCAATACTCCAGCAGGCCCCTACAATGCTTTTCACAAGGGACAGGTTGGCTCTCTAGAAGATACTGTGCTTCCCTCTTGTCTGGCTAGCTCAGTCCTATCTGAGAGGGGATGAGTCTGTGGTCAAAACGAGAATTCAGCCTTTCCTCACATCTGTGAATGTCCATGACTCTGACCTTTCCATATCTATGCAG
Seq C2 exon
CCTCCTGCCAGGACATGTCCTGCAGCAAACAAGGAGAGTGCCTCGAGACCATCGGGAACTACACCTGCTCCTGTTACCCTGGATTCTATGGGCCAGAATGTGAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174175:ENST00000263686:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=WD(100=86.2)
A:
NA
C2:
PF0000822=EGF=WD(100=81.1),PF0008415=Sushi=PU(4.7=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development