HsaINT0147177 @ hg19
Intron Retention
Gene
ENSG00000174175 | SELP
Description
selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:10721]
Coordinates
chr1:169582824-169586652:-
Coord C1 exon
chr1:169586266-169586652
Coord A exon
chr1:169582932-169586265
Coord C2 exon
chr1:169582824-169582931
Length
3334 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
ACCTTTCCATATCTATGCAGCCT
3' ss Score
8.02
Exon sequences
Seq C1 exon
AACTAACAAACCAGAAAGAAGTGGCAGCATGGACTTATCATTACAGCACAAAAGCATACTCATGGAATATTTCCCGTAAATACTGCCAGAATCGCTACACAGACTTAGTGGCCATCCAGAATAAAAATGAAATTGATTACCTCAATAAGGTCCTACCCTACTACAGCTCCTACTACTGGATTGGGATCCGAAAGAACAATAAGACATGGACATGGGTGGGAACCAAAAAGGCTCTCACCAACGAGGCTGAGAACTGGGCTGATAATGAACCTAACAACAAAAGGAACAACGAGGACTGCGTGGAGATATACATCAAGAGTCCGTCAGCCCCTGGCAAGTGGAATGATGAGCACTGCTTGAAGAAAAAGCACGCATTGTGTTACACAG
Seq A exon
GTAGGGCCTTCTCTACTTTGAAACTTTCCTGTTAAAAAAAAAAAACCCTGCCTTCTCTGGTTGGCCAACATAACCACCGAGTCAACACAAAGATACAAAGGCAGGACATGAAATCAAGGGGTAAATTGTTAGTCAATCAGTATTATTGAGCACCTTGAAGAATATAAGATCAGAATTAGAGAAAACTAGCTGCTTAAAACTAGAGGGAAATTTTAATATCATCCAGCTCACCTGTCTCATCTTATAACTGATGAAAAGGACACTCACGAGGTTTTAGTTTCTCAAGGCCGTGGAGCAGGACAGAAGCAAAGTGAGGACCAGAAACCAGTCTCCCAAATTTTAGGTGTAGAGCTTTTTTTTCACCCCTGTGTCTTGTATAACAGAGAGTGTAAATTGGAAGGAAATTTAGCCCTGCCCCTAGGTGACACAGCTGTAACTAATAGCTACTGAATGTCAGTATGCTCTAGGCATTGTGTTATTAGTTTATTTAGTTCATGTGTCATTTGCTCATTTAATATTAGTCAAATTTAGTCCTCATGACAACTCCATCAGTCAGGTTTTTCTATTACTCTTACTTTGCTGATGAGGGAAAGGCTCAGAGCTATTAAGTAATCTGCCCAGGGTTCTAAGCTAGTTGATGGTGGAGCCAGTTTCACACTCATGTTGATTCCAAAGTTGGTGTTTTTTAGCCATGTAAACTACCACATTCTTTGCTCTACATTTTTATGAGACAATTTGAGAATATAACCAAGGATTGTAAATGCTTTATAGTTTCTCTTCAACAACAACATATCTTTAGATCCATTGAACTTTGGTGGGAGGGTAGTGGTGGGGAGTGGGCAGGAAAGGAAAGAAGTAATTGAAGGTGAAATACTTCGAGTGTATTTTAATTCTCAACTTTACCAGTGCCAGAGTAAGCAGACATTCCTGAAAGCTTGGTCTTCCTCTAGTCACGAGCCTAGTGTCAGAGCTGATTCCTTCTTTCTGATGTTGCTTCCCTGTCCAGAGGGGCCGGTTCTGTCCTTTGTAGCACACGAACACTGTGCCTAAGGATGGTATGGACTGCCCCGAGCAGGAAGTTTCTAAGTACTCTGAAGCTTCTTTGATAAATCATCTGCCATACATATTCTGAATTCTTTAGATTTTAAACACCTCTCCCTCAGAAGCCCTCAACAGTACAGGTATGGAACAGAATACACAGAATAAAGCAAGCCTTCTACATTGTCCCTCTTCTCCCCAAGCCTCCTAGCTGAGGCAAAACATATCCATGAATGCATTATCATATAATCAGATCTACTTTATAAATAATGCATTTATATATAAATAAATTGATTAATTGAGCATATATTCATGGATCAGGATGGACATTACCAGGATATTAGCTCATCCTACTGCTCTCCCAGTCAGCTCTCTACCCCTTTCTGGGCTATGCCTCCCTAGAATTATCTCTTATCAGATAACCTTGACTGCCACTAGCTGTTTCAATATGCCACTACTTCCCCTTCACACCCAACCTTCAAAATCCATTTCTGCAAGACAGTCTTCCTCAATAAAGCTTGCCAAAAAAATTGCAAGATAGAAAAAAGATAAAAAATTACTGGCATAAATGATGACACTCCTCTAACCCACAACAGTGGTAGAGACATCACTAATTAATACAACTTTACCTGAACACAGATGGGTTTTATCTCCACCAACACAGTACTCTAAGCAGCCACTACCATTGATTGTCGTTTTGCCATCTAAGATGTAAAGGATGTAGAGAAGCATCAATTATCCATGGGAGATGAGAAATAGATATATTTACTGTAATATGAAATTAAGTTTGATTGTTGGAATAATTCTCCACATGTCAGGAATTATTAGACCTCAGAGCAGGCTATCGAAAAAAGATTTATTCATTGAATCATCATGAATAAATCATCTTCTCCCTGGAGATCCAAAGGAATAGACAAATTGCTAACCTATCTATTCAGGAAACCCTGAAATGGGATAGAATACAGAACATTGTCTCTTTTTTTCCCCTAGAGTTCTGAGATCCCAAGGAAGCTATAATTGGGGAAACATTTGTATGCTCCAAGAACATAGGGCAGGCAGGGGTTGCTACTGTAAGGTATTAAGACATTGGTGGGGTTAAGGTCAGGGAGCGAAGTGAATAGGATGTGGACCAAACCTGTATCCATTTAGCTGCTATTGCCTCCTACATCTTCTCTTTATTTGAACCCTTCCCAGTGTCTCAGTGCAGCTTCACCAAATTCACTGGCTGCCACAGGAACTTCTTCCTATAGAACCTTGCATGGTTTATAGAATTTTAGTATCTCAGAATTGAGAGGAAACATAGAGATCATGTAGCACAGCATATCCACATATGACATATGGATATTCTTTTGTAATATACTTCCAAGTGAACCAGCATGTGGACAGGGCTTAAGACAGAGGAAGTAACCACCAGAAAACAGTTCAGCCATAGAACTTACCCCCAACTATGACCTCATTAATAAAAACATCTCAGTGCTTTGAAAGTATCAATTCTAATACTAATTCTCATCAAGTGCATATACCCTAAAATACTTTCTTGCAGGAAAGAAACCATGGCCCTTCTCTATTCTGTCACCTGAGTGGCACTATCTTGGTGAAGAGGACATGGCAGTTCAGCCATAGTCAGTACTCTCTTCGCCTGCTGTATTCAGACTCATGAAACATCACCTCATAAGATTGTTTGTCCTTTACCATGAGTACGTCTTAAACATCTCATTTGGCTCCTCTGTTTCTCCACTGTAGGATTCTGGACATAGATTTGAAGCAAATGAAAGGTGAAAGGGTTTGGGCTCTAACACTGTGCAAGCTGAGCTCAGAGAAGTAACTTGCCTAAGGTCACATAGCAAGTAGGCAGCAGAGCCAGGATTCATATCACACCTGTGTGACCCCACGCCCCACATCTGGTGCCTAACCTCAATGCAGTAATACGTGACATTGGGCTTCCATAATAAAACAATGCTTGGTTTGAAAACCACAGCCCATTTTGTACCACATAGGGTTTCTCTGTCCACACATCTGTCATTGGCTCCATTTGTCCCTCTGTGTCCACACACAACAATACCCTCCTTAGGAAATACTAAATGCAGTATGAAATGGGAGCCACGCAATACTCCAGCAGGCCCCTACAATGCTTTTCACAAGGGACAGGTTGGCTCTCTAGAAGATACTGTGCTTCCCTCTTGTCTGGCTAGCTCAGTCCTATCTGAGAGGGGATGAGTCTGTGGTCAAAACGAGAATTCAGCCTTTCCTCACATCTGTGAATGTCCATGACTCTGACCTTTCCATATCTATGCAG
Seq C2 exon
CCTCCTGCCAGGACATGTCCTGCAGCAAACAAGGAGAGTGCCTCGAGACCATCGGGAACTACACCTGCTCCTGTTACCCTGGATTCTATGGGCCAGAATGTGAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174175-SELP:NM_003005:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=WD(100=86.2)
A:
NA
C2:
PF0000822=EGF=WD(100=81.1),PF0008415=Sushi=PU(4.7=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)