GgaINT0038965 @ galGal3
Intron Retention
Gene
ENSGALG00000004213 | ABL2
Description
NA
Coordinates
chr8:6533225-6534033:+
Coord C1 exon
chr8:6533225-6533520
Coord A exon
chr8:6533521-6533760
Coord C2 exon
chr8:6533761-6534033
Length
240 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCCTGGTTCGTTCCTGACAGGTG
3' ss Score
10.32
Exon sequences
Seq C1 exon
GTGAGAAGTTGCGAGTCCTGGGTTACAACCAGAATGGTGAATGGAGTGAGGTACGTTCGAAGAATGGGCAGGGCTGGGTACCAAGCAACTACATCACACCAGTCAACAGCCTGGAGAAGCACTCGTGGTATCACGGGCCGGTGTCACGCAGCGCAGCAGAGTATCTGTTGAGCAGCCTCATCAATGGCAGCTTCCTGGTTCGTGAGAGTGAGAGCAGCCCAGGGCAGCTGTCCATCTCGCTCAGGTACGAGGGACGTGTTTACCACTACAGGATCAACACCACCTCAGATGGAAAG
Seq A exon
GTAAGGATTTCTGCACAATGCTGCGGGAAAGGGAAATCTATCTAGCTGCCTTCTGCAGTGAAAATTGCACAGAGGAGCGTTCATTTGCTCAACCCAACTGAGAACCAGTACTCTAACATCTGGTTCTGTTATTTCTTTTTTCCAAAGCTGTTGGGATGTTTTTACTGTACCCATTTTCCAGCATAACTGAAAGCTCTCAGCAGCCTTTACCTAAGCAGATTCCTGGTTCGTTCCTGACAG
Seq C2 exon
GTGTACGTGACAGCAGAAAGCCGTTTCAGCACGCTAGCAGAACTGGTGCACCATCACTCCACAGTAGCAGATGGACTGGTGACGACTCTGCATTACCCAGCACCCAAGTGCAATAAGCCCACTGTGTATGGAGTGTCCCCCATCCACGACAAGTGGGAGATGGAGCGGACTGACATCACCATGAAGCACAAACTCGGGGGAGGGCAGTATGGCGAGGTGTATGTTGGTGTCTGGAAGAAATACAACCTCACCGTTGCTGTGAAAACATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213:ENSGALT00000006699:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(59.6=28.3),PF0001719=SH2=PU(73.7=56.6)
A:
NA
C2:
PF0001719=SH2=PD(23.7=19.8),PF0771412=Pkinase_Tyr=PU(12.7=35.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTCATCAATGGCAGCTTC
R:
TGATGTCAGTCCGCTCCATCT
Band lengths:
301-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]