HsaINT0001798 @ hg38
Intron Retention
Gene
ENSG00000143322 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr1:179121595-179126672:-
Coord C1 exon
chr1:179126377-179126672
Coord A exon
chr1:179121868-179126376
Coord C2 exon
chr1:179121595-179121867
Length
4509 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTTCTCCTTTTCTTACCAGGTG
3' ss Score
12.04
Exon sequences
Seq C1 exon
GTGAAAAGCTACGAGTCCTTGGTTACAACCAGAATGGTGAGTGGAGTGAAGTTCGCTCTAAGAATGGGCAGGGCTGGGTGCCAAGCAACTACATCACCCCAGTGAACAGCCTGGAAAAACACTCCTGGTACCATGGACCTGTGTCACGCAGTGCAGCTGAGTATCTGCTCAGCAGTCTAATCAATGGCAGCTTCCTGGTGCGAGAAAGTGAGAGTAGCCCTGGGCAGCTGTCCATCTCGCTCAGGTACGAGGGACGTGTGTATCACTACAGGATCAATACCACTGCAGATGGCAAG
Seq A exon
GTAAGACTCCCTGGTCACCACCTTTAAGCATGGACTGGCTACTCTGTGAAATAATATTCAACGTGATTGAAGTGAAATAATAGATTTTATGTCTGACGTGAAATAAAATATTCACTAGCTTTGTGAGTTTGGGCTTTTTGGCATGTTAGAGCTTGTACTCTTGAAAAGGATATGGTAATAGAAATTTTTAAAAACAGTATTATATTAATATTTTAAAGATAAGCTAGATTTGAAGGTGAAGAATGAAGGGAACTGCTCTATAAGTTAGCTGTTCTTATAATCAGTACACAAATATACACCCAGTGCACTGGTATAGAGTTTATCAGTTAACATTGTATCATTGAAAATTAGAATAATATCTACCAGAAAGTTCACAGAGTAAGAATTTAGACTTTTGAGCTTGGTGTCGATCATTAATGTATATTAACTGAAACGGATCATTCAGTCATTGAACAGTTTGTATATTGGGAACACCAACCATGTTAGTTAGAATGGATGTGTTACAGTGTGTTTACACATTATAAACTACAGAGCATGAGCTTATGTCCGTTGGTTATCTGTTGAGCAGTAAATTTAGGTTGAATTATTTCTTCTATTCTCCTCTATGTGATAGGCAAGCTGTGGGGGAAGCACAGGCTTTGGAGCAAGCAGATCTGATTGTGACCTTACATAAGTCTCAATTTCCCTGTCTGTAATTAGATCCCACTTTATTGGGTTGTTGTAAGGATTAAATGAAGTAATTTCTGTAAAACATAATGACTGATACAAAGTAGAAAATAAGTAAATTTTTAATTTTCTTTCACTTTTGCACCAGCATACAGACATAGTATGTTTCCTCTTGACCAAACAGAACAGAATCAGATGTGTAATAATATAAGAGTGACTTAGCAGTTCTAGTTATTTACCTAATAGAAATGAGTGCATATGTGTGCCAGAAGACATGTATAGGAATGTTCATAGCAGCATTGCTTGTGATAGCCAAAAACTAGAAACACCCACAGATCTAACAACAGTAGAATGGATTAATAAATTGTGGTATATTCATAAAATGCAATTTCATTCAACAACAGAAGCGAACACAGTACTGCTACACACACCACCACCAGGTAAAACTATGGCCCTCCAGCCGTCTGCTTTTTTTTGTAAATAATATTTTATTAGAATACAGCCACACCCATTTGTTCATGTATTGTCTATGGTTTCTATTACTAGGCAGTGCTGAGTAGTTCACAGTTCTGACACACTATGGCCACAGCCTAAAATATTTATTATCTGGCCCTTATGAAGAGTTTGCTGGCCCCTACTCTAGATGAGTGTTAGCTGACTCAACAACTTCAGCAAAGTTGAAGGATTAGTATTAGCCAGGGGATGAGGATGTGGGGAGTGGGAAGGACTCCTAATAGATATGAGGTAATGAGAATGTTCTAGAGTTAGATAGTCATGATGGTTGGACAACTTTGAGAATATGCTAAAAACCATGAAATGGTATACCTTAAAATGATGAATTTTATGGTATCTGAAATATAATGCAATTTTTAAAAGTTGGGTGGAAAAAAGCAGACATAAAACAATACATATTGTGTGATTCTGTTTGTGTATAGTTCAGAAGCAGAGGCCAGGCATGGTGGCTCACACCCGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCCTCATCACTGGAGGTCAGGATGTCAGCCCCACAAACATGGTGAAACCCTGTCTCTACTACAAATACAAAAATTGGCCTGGCATGGTGGCACGCGACTGTAATCCCAGTTACTCAGGAGGCTGAGGCAGGAGAATTGGTTGAACCTGGGAGGTGGAGGTTGTAGTGAGCCAAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGCAGAAGCTAATCTAAGATGTTAGAAGTCAGCATAGTGGCTATCTCTGCAAGGGCAAATAGCTGGAGAGCATAAGGGAGGCTTCTGGGGTGCTGATCATGTTATAATTCTTGGTGTGGGTGATGTTTACATGGGTGAGTTTACTTTGTAAAAATTATCAATTTTCTGTTTATGAATTGATACTTTATACACTAAAACAAAAGCTTCTTTTTTTTTTTTTCTTTTGAGATGGAGTCTTGCTGTGTCGCCCCGGCTGGAGTGCAGTGGCGCGATCTCGGCTTACTGCAAGTTCCGCCTCCCAGGTTCACGCCGTTCTCCTGCCTCAGCCTCCTCAATAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGTGTTTCACCATGATAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCGCCCGACCAAAAGCGTCTTTAAAAAAAATAAATAACAGGCTAGGCATGGTGGCCTATGCCTGTAATCCCAACACTTGGGGAGGCCAAGGAGGGTAGATCACTTGAGCCCAGGAGTTCAAGACCAGCTTGAGGAATATAGTGAAACCTCATCTCTACAAAAAATTTTAAAAATTAGCTGGGCATGGTGGCATATGTCTGTGGTCCTAGCTACTCGGGAAGCTGAGGCAGGAGGATCACCTGAACCTGGGAGGTCAAGGCTGCAGTGAGTCATGATTGTGTCACTGCACTCCAGGCCGGGCAACCGAGTGAGACCCTTATTTCTCAAAAATACATAAAAATTAAGGCTCCCTTGGGAGAGAAGTCCAGAGAATTCCCTCTTACTTTACATTTCTTATTGCTTAGCAAATTAACAACTATTTTGTAAGCAATTCTGTGAAATCCAGTGTGGCTCTTTTCTTTTTTTTAGATGGAGTCTTGCTCTGTCACCCACTCTAGAATGCAGTGGCGTGATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATCCTCCCACCTCAGCCTCCCAAGTAGCTGGGACTGCAGGCACGCACCACCAAGCCTGGCTAATTTTTGTATTTTTAGTAGAGAGGAGGTTTCACCATGATGGCCAAGCTGGTCTCAACTCTTGACCTCAAGTGACCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTGCAGGTGTGAGCCACTGCTCCTGGCCACCGGTAAATTGTGGCTCTTTCTTTAATGGCCTAGACACTCAACTGCACGTCATAATTAAAATTATGAGATATTTGAATACTCTTACCAAAAAAATCTAAATCAGTGGTTTTCAAGTTATGTTTTTTACAAGATTAAGGTGATATTTTGTAAATTTCTACAAGAGGCCAAGTCCTTGCTTGCCTACTTTGATCAGGGTATCTCTTCTTTACGTATCTTCTGTAGTTGAGTCCATAGTCTTGTGGCTTAAAAATATTTGAAGACTGGCCGGGCGTGGTAGTTCACACCTGTAATCCCAGCAATTTGGGAGACTGAGGCAGGCAGATCACTTGAGGTTAGGAGTTCCTGACCAGCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAGAAAAAAATTAGCCAGGCGTGATGGCGCATGCCTGTAATCCCAGGTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCTGAGGTCATGACACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAAAAGAAAAAAAGAAAAAGAAATATATATTTGAAAAAATACATAATTTGAGTATATATATATTTGAAAATATATATATATTTGAAGACCAATGAGCTTGATTATCCAGAGAGAGATCTTGGAAGGTTTTTCCCAAGACTAATTTAGGAAGAATAGGAAAGGCAGATTAAATAAGATTAAACTGAAGTTCTGTGTTTACCCTTGCAATCATCATTTAACTTTTTTATTTACCTCAATTAAGATAAACTCTTGCTGGGTATACTGGCCCAGTCTGTAATCTCAGCACCTTGGGAGGCCCAGGCAGGAGGATTGCTTGAGGCTGGCGTTTGAGACCTGCCTGGGCAATAGTGAGACCCTGTCTGCAGAATATTTTTTTTTTTTTTTTTTTTTTTAAAGATAGCCTTCTATCTATATCTTCAGGCCAGTGAAATATGGGCTTTAAAAAAGAATTCCTAGGCCGGGAGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCCGGCAGATCACGAGGTCAGGAGATCAAGAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTATAGTCCCACCTACTCAGAGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCAGTGCACTCCAGCCTGGGTGACAGAACAAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCTTAATCTCTTTTCAAGTTGTTTAGCTTTTCTCCTTTTCTTACCAG
Seq C2 exon
GTGTATGTGACTGCTGAGAGCCGCTTCAGCACCTTGGCAGAGCTTGTACACCATCACTCCACAGTGGCTGATGGGCTGGTGACAACATTACACTACCCAGCACCCAAGTGTAATAAGCCTACAGTCTATGGTGTGTCCCCCATCCACGACAAATGGGAAATGGAGCGAACAGATATTACCATGAAGCACAAACTTGGGGGCGGTCAGTATGGAGAGGTTTACGTTGGCGTCTGGAAGAAATACAGCCTTACAGTTGCTGTGAAAACATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143322:ENST00000502732:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(59.6=28.3),PF0001719=SH2=PU(73.7=56.6)
A:
NA
C2:
PF0001719=SH2=PD(23.7=19.8),PF0771412=Pkinase_Tyr=PU(12.7=35.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development