GgaINT0038973 @ galGal3
Intron Retention
Gene
ENSGALG00000004213 | ABL2
Description
NA
Coordinates
chr8:6540173-6541863:+
Coord C1 exon
chr8:6540173-6540406
Coord A exon
chr8:6540407-6540721
Coord C2 exon
chr8:6540722-6541863
Length
315 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACT
5' ss Score
5.86
3' ss Seq
TACGTCTTCCATGTCCTCAGGGC
3' ss Score
9.83
Exon sequences
Seq C1 exon
GTTTTATCAGAAGCACACAGCCAACAAGTGGGTCTCCCGCGCTGCCTCACAAGCAGAGGGACAAGTCACCCAGCACCCTGCTGGAGGATGCCAAAGAGACAACTTTCACCAGGGACAGAAAAGGTGGCTTCTTCAGCTCCTTCATGAAGAAGAGGAATGCTCCCACACCTCCCAAGCGCAGCAGCTCCTTCCGGGAGATGGAGAATCAGCCCCACAAGAAGTACGAGTTAACGG
Seq A exon
GTAACTTTTCATCTGTTGCTTCCTTGCAGCACGTGGATGGGTTCGCCTTTGCTCCCACACAGCAGGACACAAACCTGGCACCACCCAAGTGCTACGGTGGGGGCTTTGTGCAGAGGACCTTCTACAGTGATGATGGCACTGGTACCGGCAGCGGTGGGGGTGTGAGCACTGGCGGTGGGTGGTCTGGCATCACAGGTTTCTTTACACCACGCTTGATTAAAAAGACGCTGGGTCTGCGACCAGGAAAGCCCACTGGCAATGAGGAAGCGTCAAAGCCTTTTCCAAGGTCGAACTCTACGTCTTCCATGTCCTCAG
Seq C2 exon
GGCTTCCAGAGCAGGATAGGATGGCAATGACCCTTCCCAGAAATTCCCAGAGGTCAAAAATCCAGCTGGAACGGACAGTGTCCACCTCCTCTCAGCCTGATGAGAGCACAGGGAGGGCAAATGACCTGCTGCCCAAAAGGTTTGAAGAAGGTTCTGCTCTGACTAGAGAAAGACCAAAAGCAAAACTCTTGCCAAGGGGTGCCACGGCTCTCCCTTTCCGAACCCCCTCCAGTTCAGAGGAAAAGGAGATTCCAGGGCTAGCAGCAACTCCTAAAAGCAAAGAAAAAAACAGTGGCCCACGGCAGGGGGCCCTCGAGGATAGCGAGAGACCGGGGTGGTCCTCTCCAGTGAAGGCTGCAGCAATACTTCCAACCACTCATAACCACAAAGTGCCAGTCCTAATCTCACCCACTCTAAAACACACTCCAGCAGATGTGCAGCTCATTGGCACAGACTCTCAGGGTAATAAGTTTAAGCTCTTATCTGAGCATCAGGTCACTTCTTCCGGCGACAGGGACCGGCCCAGACGGGTAAAACCAAAGTGTGCTCCACCTCCACCACCAGTGATGAGGCTCCTACAGCAGCCAGCTGCCTGCTCAGATGCAGCAGAAGAGGTAAGCAATGCAGTGGGAGTGCAGCATGGGCTGGAGTCCAGCGAAGGGAGTAAGAAGGCAGCAGCAGCACCTGTCGGTGGGAAATCTGGGAGGCCCGCGATGCCTCCACCTCAAGTGCCTCTGTCGTCGTCCTCCGCCTCCCCAGTGAAAATGGCCAATGGCACAGCTGGCGCAAAGGTAGCATTAAGAAAGACCAAACAGGCAACTGAGAAAATCCCAGCAGACAAAATCAGCAAGGAAGCATTGCTGGAGTGCGCCGATCTTCTCTCGAGTGCCATCGCTGAGCCAACACCGAACAGCCAACTGGTGGACACGGGGCATCAGCTGTTGGATTACTGCTCAGGCTACGTGGACTGCATTCCGCATACACGCAACAAATTTGCCTTCCGGGAAGCCGTGAGCAAACTGGAACTCAGCCTGCAGGAACTGCAGGTGTCCTCAACAGCTGCTAGCATCCCTGGGGCAAACCCCATCCTTAATAACTTATTGTCGTGCGTCCAAGAAATCAGCGATGTGGTGCAAAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213:ENSGALT00000006699:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=27.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAATGCTCCCACACCT
R:
CTGCTAGCCCTGGAATCTCCT
Band lengths:
349-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]