MmuINT0009057 @ mm9
Intron Retention
Gene
ENSMUSG00000026596 | Abl2
Description
v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) [Source:MGI Symbol;Acc:MGI:87860]
Coordinates
chr1:158571124-158579750:+
Coord C1 exon
chr1:158571124-158571360
Coord A exon
chr1:158571361-158571672
Coord C2 exon
chr1:158571673-158579750
Length
312 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACT
5' ss Score
5.86
3' ss Seq
TACATCTTCCATGTCCTCAGGGC
3' ss Score
9.58
Exon sequences
Seq C1 exon
CAGGGTTCATTAGAAGCACACAGGCCTCCAGTGGGTCCCCAGCTCTGCCTCGAAAGCAAAGAGATAAGTCGCCCAGCAGCCTCTTAGAAGATGCCAAAGAGACATGCTTTACCAGGGATAGGAAGGGGGGCTTCTTCAGCTCCTTCATGAAAAAGAGGAACGCCCCCACGCCCCCGAAGCGCAGCAGCTCCTTTCGAGAAATGGAGAATCAGCCCCACAAGAAATATGAACTCACGG
Seq A exon
GTAACTTCTCACCTGTTGCTTCTCTACAGCATGCTGATGGGTTCTCTGTCGCTCCCAGCCAGCAAGAGCCGAATCTGGTGCCAGCCAAGTGCTATGGGGGGAGCTTTGCACAGAGGAACCTCTGTGCTGATGATGACAGTGGTGGGGGTGGGGGCAGTGGCACTGCTGGGGGCGGGTGGTCTGGTATCACAGGCTTCTTTACACCTCGATTAATCAAAAAGACACTGGGCTTGCGAGCAGGTAAGCCCACAGCCAGTGATGACACTTCGAAGCCTTTTCCAAGGTCCAACTCTACATCTTCCATGTCCTCAG
Seq C2 exon
GGCTTCCAGAGCAGGATAGGATGGCAATGACCCTTCCCAGGAACTGCCAGAGGTCCAAACTCCAGCTGGAAAGGACAGTGTCCACCTCTTCTCAACCAGAAGAGAATGTGGACAGGGCTAATGACATGCTTCCAAAAAAATCTGAGGAAGGTGCTGCTCCAGCCAGGGAGAGACCAAAAGCCAAACTATTGCCCAGAGGAGCCACAGCTCTTCCCTTGAGAGCCCCTGATCCAGCCATCACAGAGAGTGACTCTCCGGGGGTAGGGGTGGCTGGAGTGGCAGCTGCCCCCAAAGGCAAGGAAAGGAATGGTGGGACGCGACTTGGAGTCGCTGGAGTCCCCGAGGATGGAGAGCAGCTAGGCTGGTCTTCTCCAGCCAAGGCTGTAGCTGTCCTCCCAACCACTCACAACCACAAAGTGCCAGTCCTTATCTCTCCCACTCTGAAACACACTCCAGCTGATGTGCAGCTCATTGGCACAGACTCTCAGGGGAACAAATTCAAGCTCTTATCTGAGCATCAGGTCACATCCTCTGGAGACAAGGACCGACCCCGTCGGGTAAAACCAAAGTGTGCCCCACCCCCCCCACCAGTGATGAGACTACTGCAGCATCCGTCCACATGCTCAGACCCCGAGGAAGAGCCGACTGCCCCACCTGCAGGACAGCACACTCCAGAGACCCAGGAGGGAGGAAAAAAGGCAGCTCCAGGCCCAATGCCCAGTAGTGGGAAACCTGGGAGGCCAGTCATGCCTCCACCTCAAGTGCCTTTGCCCACATCTTCCATCTCACCGGCCAAAATGGCCAATGGCACAGCAGGTACTAAGGTGGCCCTGAGGAAAACCAAACAGGCAGCTGAGAAAATCTCAGCTGACAAAATCAGCAAAGAGGCCCTGCTGGAGTGTGCCGACCTACTGTCCAGTGCAATCACGGAACCTGTGCCCAACAGCCAACTGGTGGACACTGGGCACCAGCTGCTCGACTACTGCTCAGGGTATGTGGACAGCATCCCTCAGACTCGCAACAAGTTTGCCTTCCGAGAGGCTGTGAGCAAACTGGAACTTAGCTTACAGGAGCTGCAGGTGTCTTCCACAGCTGCTGGTGTGCCTGGGACAAACCCCGTCCTTAATAACTTATTGTCGTGTGTACAGGAAATTAGCGATGTGGTGCAGAGGTAGCCATCGTCGGCTGAGTGGGGAAATGCACACATTCTGAGGGGAAAGGGAAAGGGACTCGTTTTCCTGTGTTCTCGTTCTCAAAAAGTGAAAGACTGATACTTGAGTGTGTTTATGTGAAGTACCTCAGGTCCCTGAGTTCTCACGTTTACAGGGTCATCTCAAAACAGCAGAAAGGAAGTCACAGAAGTAGATAAAAAGTCAGTGTGGTGGAGCAGGGCAGTGCGGGCAGGGTTGGAAAGTGCACTGGGAGATTAGGGAGCCTCGTGTATACATCATAGGAAGGCATAGCCCGCCCTCTCTGCGGTGGCCTGTGCCGCCCACCGCCCACCGTTGGGCTGCTCTCAGTTGTGCTGTACTGCGAAACAGGCCTTGACTTGGCCAGTCCTGGGGGTTATCACGTTTCAGTTTACTGCAAATCTGGGGAGCGGGAGAAAGCAGTGTGGGGGATGTAGCAGGAGATGTTTTATTCGAGACTAGTGGAAGTGGCTGTTGGCCTTGCTTCCGTGGTCATTGCTGTTGTAGCAAGAACTGCACATTAGATTACCAGACTACTCCACTGGGAGACATGGCCTTTCCATCTGCTTTGCACTATTTACCACGGCTGTGTCAGTTGGTGCAGAAAGTACACAGTGCAGCGGAAGTTTAGTCAGACAGACACCTCCAGGCTCTCGTACTGACTAGCAGTCACTTCTCCCACTCTTTTGGAATGTTACTTGCTAGTGGGCCAGTATCCACCTGTAGCTTGTTGGTGGCTGTCTGTAAGCCATGGGCATAGGGCAGTCTCTCTTCCTTCATTCCTGGCAGCATACCGGGCATTACCCAGCATCGATGTTGAAAATAGTGCTCACTACAGGTGCCCCTGATCACTGACACAATGGCCACTTGAGCAGCTACACATACTCTGCACTTAATGAGAATACCAAGCAGATGTCGTACCTTTCTGAAAGGGGCTGGCCACATGGCTGCTTGTACCTTTCCCTCCTTGCAGCCCTCTGGCTGGCTGTAGGGAGCCGTGTCCACTGAGGGCTCGCCTCCACAGGATCTCGTGTTCTTTGTCTTTGCTCCCAGACCATCCCTAAGCCCTTGTTGCACTTGGAGTTTGTGTTGGGAATATTCTTTATTTATTTTCTCCTTTCATCTCTATTTCAGTGTGCATAATAGAAGGAGTGGGTTATTTTCAGGGAGCACCAGTTAGGCCCAGAGCCCTCAGGGTTTAACCTGAGAGTTGGTTTTGCCTTTGAGAAATGCCACTCCCCTCCCCTGATTACAGTCATGGAAGCTATTAGAGTAACATGGGATAGAACCGTAGCAGGCTGCACATTACTTATGGTTTTGGTGTTGTGTCTAATTCTAGTTTCTGGGTTTTTTTTTCAAAGAGAGCCAATACAAAATATGGTGATGTTTCTTTTTCCAAAGGAATATTAATGTAGGAAGATGAGAATTGCGCACTAAGCAGTGTTTTCTTCCTGGCTCATTGATCCACGCCGTCAAGTCGCTGCCCCGTCTTCTGATCTCTTAATTGAAGGCACTAGCCCACATTCCCAAGCGGGTTTTGCAGACTTAATATACCACTCCCGCTGAGAGGCTCTCTGGGAAGCTCTTAATGTTAACTTAATGTTGTTGGGTCGCTTTTCATTCTCTTTGCTGAATCACAAATAAGAAACTTTGAACTGCCAGAATCGGGCCAGAACCCTAAGGGGAAACTATTTTAAGTCGCATTTGGCATCCTTAACCAAGAAAGAAATTAAATTTTCAATTAGAAAAAGGAAATTTGGATGCCTGTCACTGCTGCTTTAGTGAAAGCTCAGGGTGAGCCGAGGCCTGGGGTAAAGGACCCAGCCCTGCAGTGGCAGCATGTTCCCTCAGCTGCAGCCTGACAGCCAGGCTCCAGGTTCATGCCCCTGGAGTCACGGAAGAGGATTCCCTCCACCTTGGTGGCCACTGTTCTGCACATCGGATGCACGCATAAACTTGAATTTATTCTAGCAGTTAACTTAGTTAGATGGGGCAGAGGAAGTGAAAACTTGAGGGCATTATTAATGCTGCTTTTAGCGTATGTCCCTTGCCGTGGTGGGATGTCTTAATGGATGGTGGTTGTTTTGGGTTTGGGTCTCGTTTTTGTTTGTTTGTTATTGGTTTTCCCTTCAGAGTTCTGAAAACAAGCAAGTAGTGTTCTTCAAAACACTGCTGAGTCTCTTGGCTGCCTGCTTTTCTTTCTCTGAGGCCCTGAGTCATGTCTCACTCAAGCGTCTGCCCTGCTCACACAGCATCACTAAATCCATGAGCTGAACTGACTGTCCTCTCCTCATGACGCATGAGCGGTGTCCTTTACAGGGATTGAGGCCTCGGGCCACAGAGGCACTGTCAACTTGCTGTGGAAGAATTATTTACGTTTGTCTTGCATCTACCTGCAAGGGACCAGCTTAAAAGGGGGGGGGGGGGACACAAAATAAAAGGTTAGAATCTAAATCAGAGAAAACTGCTTTTAGAAGCGAAAAATGTAATTAATTATGTAGCCTAAAAACAAAGCAGATGGCGAGAGAGAAGGCTCTGGCAACTCCTAAAGCCGTTTGTCCTGGGCAGACCTTTGCACTGTGACAGCTTGCTTACTCTCATTACAAGTCCCGTGACTTCAGTTGGCTCTCCTGCCTTCAGATGCAGTGCTTTGTATTGAATATAGCCAAATTCTGCTTTACGGGGAACTTGGTTGTTGTCGTTTAAGCTTTGGGTACAATTATATTTCACATTTCCAGGTGATTTCCATCATGCTGTTCAGAAAGAAAGGCCTTAAAATTGGCCTTTTGTATTTTGCAGTGAGATGGACTAAATTGAACATAATATACCAAGCTGTGATCTGGCATGTAAGAAACTGATTTGGTCATTTTCAAGATGCCCTTCGTAAAAGGTCATCATAGTGGATTGGAGACTAGTTTCCGGCCTCATTTTAAGGTTTCATTTATAAATGTTCCTACTTAAATCCTCCTTAGCAGACAATTGGCTGGTAAAATCATTTTCTGTTAATGAAGACAGTGGTTTTTAAGTTAGGGGTACAGCATTACCGATAGTGTGAGGCCATGTTTATAGGCTGTAGCTCAGGTGCCTGGGGCAGTGACCACCTAGGATGTTAATTGCTAGTATGAGCTCCTAACCTGGGAGCACACAAACATCCTCTAGAGATTTTTAAAGGAAAACTGATGAATTAGCCCCGCTTTGATGGAATCCCTGGTGGGATGAGAGACTAGCTAGCATGCTTCCCAAGATCTTCTCCAGGTTTCAAACACTCCCCGCTCTCTGAACACTGTGCACAGCAGAGGAGACGGGAGAGTACTGTTGTCACTAGTTCATATCTTGGAGCAGCTAATGGCAAAGCTGGGGCTAGAATTCAGGAGTCCTGACATTTGGCATCTCTCCACAGCCTGCTGCCTTGTGAGATGCCGAGCTAGACAATCAGTGTGCATGGTGCTGCACACTTCTAAAGCACAGGCTCTGGCAGGCCTGGCCAGGGAGGGCTTGGATGTTTGGTAATGGCAGTGTAGCTGGACAAGCCTTTAGTAGAACTCCGCTCTGAAGAGAACTTAGCACTGTTCTTCTAGACCTCAGGCACACATAGAGATCTGCACTTTGTAGTTGAAGAATACCAGCTTGAGTTGTTTAAAAACAAGAAGGAAAAAAAAAAACAAACTAGTCCTACACTCTTTTTTGTTCAAAAAGCAATGTGTTGTTCAGTGTCATTTTAATGCATGTGAGGTAGTGTATCTGAAAGCACCTTGAGAAATCAAATGCATTCACTGTAAAGCTGAATTGCGAATGTGTGTAGAGGATGAGCTGACCTGGACCTGGAGCTAGAGGCTCACCCTCTGCTGTGGTTTGTTGCAGACATAGGTCCGACACTGCTAAATGTGCATGGGAAGACACGGCGCTGTTTGCTAACAGTTTAGAGCTGAGCAGCTTCAGGAAATTAGGGGCCAAGTCTTTGGTTTAATTCTCATCTTTAAGAAGTAGTCAAGTGGTGGCGTGCAATCCAGCAGTGAAGAGGCTAAGGCAAGAGAGTCTCAGGTTCTAGACCAGCCTCGGCCTCAGGAGATGCAAAGGAGGAATAGATTACTCCCGGTGGAGCCAGCAGCTTTTCCAGGCCCTTGACTGGAAGATGAAGACCCCCTTCCTCTTGAGCAGTCCTCTGCTACATGCTCGGCTTTTGGTGTGGTAGGAGCAGACTCATCTCCTGTTTATGTTGACACTTTCTTTTAAAAACTAATGTCTTGGGGTGGGGGGAAAGTTGGGGGTAGAAGACTGATGTACTTGGAGAATTTCTAGAATTTTCTCCCAGTTATAAATGACAGTGACTCCTTTAAAAGAAGAGTAGCTGAGCTTAACTCACCTGTTAGATTATCATGTATTCCAAAAAATCATGTGGAGGTGGCCTGCGTAGAGCGGCACTCTAGTCTCTTCCCCTGCCCCGCCTTTTCTACCTTTGCTAGTGATGCCCTGTTCATTGGGCTGTATCTTCAGGGGAGTTGGTATTGGGTTGACAGAGTCATCTTTATTTCTGTTCTCAATGATCTGTGTCATCACCTTGCATGCATTAACTTGCTTCATTTGAATCTGACATACATCTTTATGCCCTCAGCATCTGCTATGGCCAGTACTTTCTGTATTTCTTGTCAGCTGCTTTAGCTTGGTCAAGCCTGGTAGCTTAGTTCTTTGGATTTTGTAGGCATGCAGAGGCCTAGAGCAAGGCAGTTCCTAGGGAACCTGTGCTCAGACTGCCGGAGGCAGCCTAAGGGTGCCTATGGCTCCCATGCTGCCGTCACCTCTGAGGCAGAGAGGCGAGACCTTGGGATGGTCCTAACACTTGGTCTACTCCTAAGTCTTATGCATAGAGTTCCAGTTTTCCAGCTTAGGACTCAGGAGTGCTTGGAGTGGTGGTTGTTCCTGTTACCTGTGCTGATGAGCCCAGCACAGTGACCCAACTTCAGTGCTGTTGCCTGTGATCCTGTTACTACGGAGGCTGGCTCAGCTCACCCTGCTCCACTGCCATGTGTTTGTGTTCCATCTTGACTAGGTAATGATAACTCTTCTTTTAGACTAGCTCCCCAGGTGCCTCAGGAGGACCCTGGATGGAGTCTGGGCAGTTTATCTTGATAAGAAACTGACAGAAGCCTTGATTAGAAACTGACAGAAGCCGTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAATGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGGGGGGAAAAAAAAGGAAAGGAAAAGGAAAGAAACTGACAGAAGTCATCTTCAGAGATTTGTACCATCAAAGATGAGTTCCTGAGTATTACTGGGAGAAATACTTGCCTGCTGGGCTGTTCATAACTATTGAACTAGAGCTCAAAGTCCGTTGCTTCAGACTCTCCATTCATCTCTCTGCACACTGGCAGATTGCTGCCGTGCTTTCTCCATCCTATGTGATGTGCTGAGGGAAGAAGGTCCTTCTGGACCAGCCTCCGCCTCCACTCACACTTCCTTTGCTCCATGTATGCCTATAAATTTGAGACTGTTTACCCCTCCTAGATAATAATAATCTTTATTTCCCTGGTGCGGACAAACAAGAACACAGTAGCAGAACCCTGCACACTGAGTGGATCTGCAAAGTTGCCATCTAAGGATAAAATAGGCCCACTTGTCCTCGGACCATAGCATCTTGAGAAGAATAGGGCTGTGTGGGGTCCTGAGTTATTCACCTGTTTTGAGAGCTTGGACCCCAGCCCTTTAGAACATGGAGGAGGCACAGTCAGATGCTAGCAAGGTGGTGAAAGGAAATACAAAGAGTTCTGTGGGTGGAGCTTGCTCGCTTGCTTAGGTTTGTTTCTGAGTTCCTGAATAGCGCTTTAACATCTTGTTTTTAGCGACCTTATAATTTAGGACTAGTGGGACTTCATAAAAATGTCACATACCTGAGTTCCCAGTTTTCAGCAGATATAAAGTGGCACATCTCTTGTTGAGTCAGGGGACACTGCAGGGGCTGTAGTGCTCCAGGATCCTTAGTTCCCAAGTTGTCTTTGGTTGCTTTAAGACCCATGCTGTGTTGTGAATGACAAGAATGCTGATGGTCAGGGCCACGGGAACCTGCTTGCTTGATCTCGGTGGCCAGCTTCCTTTATGCCACTTGAACTCCATCCTGAGAAGTGTTTGCTGAGACCTTGAGAAATGACCTTCAGGAACATGAGGATTCAGAAACCTCCCTGTAGCTCCTTATCACCTCTCTCTGAGGGCAGAGGCAGTGGCTGGTGAGCACCCTGCACACACACACACCCCTTCCTTGTAGACCCTGCACTTCTTCTCGTTTGCAATCTGATTCTGTAATGACTATCAGTGGAATTGCCCGACTTTGTGTTTGCTTGATAAAAGTAAATTTGAACATTTTGTGATGGTTGATAGAACTTTGTCCTAAAACTTGCTAATTCAGACTCTTTAAAACTCTAATGTTTATACCAAAGGTTACACTGCAGGCGTAGGTGGTACACAGAGGGTGACTCCCTAGAGTGGGCACTGTGTGCATTGCTAAGGGGACACAGTGCCCAGTGAGACCATATGGGATTTTACTAAACACGTCAGTCATGGGTCACACTACCACTGTTGTCAAGTATTTGTTCTTAATTGTTATTGTAATATATTTTCGATTGTTTTTCTAATTTAATTCTCTCTGTTGTCTGACTGTGAACTGCTAACAGTGTTAAAAACTTGATGTAAATAAACGATGCCCCTGGCAGGGACTGTTTCCTGCCATGTCTCACAAGGTTTGCAAGTTGTGTTTTGTTCTAAATAAAAGCTGAAATGATTTATAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026596-Abl2:NM_001136104:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=NA C2=0.767
Domain overlap (PFAM):
C1:
PF089195=F_actin_bind=WD(100=18.1)
A:
NA
C2:
PF089195=F_actin_bind=WD(100=26.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAATCAGCCCCACAAGA
R:
TTCCTTTCCTTGCCTTTGGGG
Band lengths:
343-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: