GgaINT0039017 @ galGal3
Intron Retention
Gene
ENSGALG00000002803 | MTA1
Description
NA
Coordinates
chr8:4087527-4088294:-
Coord C1 exon
chr8:4088201-4088294
Coord A exon
chr8:4087552-4088200
Coord C2 exon
chr8:4087527-4087551
Length
649 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TTAAAACTTCTTTTTTTAAGCAC
3' ss Score
5.74
Exon sequences
Seq C1 exon
ACCGCCAATGGAAATGTGGAAGCAAAGGTGGTGTGTTTCTACAGAAGAAGAGACATTTCAAGCACACTTATTGTATTGGCAGATAAACATGCAA
Seq A exon
GTAAGCTTGTTTGTGTTCATATTGCTTCTGTGCCAAATGTCCAAACTTGGGTAGAATTTTGTTGCAGTTGTAAGTATTGTTATTTTAAAATGTAATTTCCCTGTATTCATCTTAAGCAAACTGCATTGCTGGTTTGGCTGACTTCTTTTTCCCTGCCGTGCTTCCTTAAAACCTTGATTGTGTATGGCTTGGTTATCGTGGTGGGGGAACCATCAGTTTGGGACTGAATAAAGGCATCTTATTGGCTTCATGAAAGCAGATTTCCTAACTTCTGGAGTGGGAGAGAAAATATTCTTTCTTGCAATTACTTCTCCATGAATTGATTGGATAGCAAAACAATAACAAAAAAAAAAAAACCCACTTTGCTTTAAAGAGTAAGTCAAATAGCCTGCTAATGGGAAATCAGCTTTTGAAATGTGGCCACCTTGAAACTTGGCTAGCAGGAGTGTTGTCTTGAAATTTCAATGTTAGTCATGTATTTCTTTTTTTTTCAGTTGACAGATTTCCTGTGCACGTGCTGAGTAAATACGTTTTAAAGCACTGAATTTTAGGACCTTCTGTCTCTGTTTTGGATAGCTCAGCTCCTTTTGTTAGGAAAAGAACAATGTCTAGGCTTGAGACTTGAACGTTTAAAACTTCTTTTTTTAAG
Seq C2 exon
CACTATCTATAGTTTTTGCTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803:ENSGALT00000004434:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.604 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(21.7=100)
A:
NA
C2:
PF0142613=BAH=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]