RnoINT0094964 @ rn6
Intron Retention
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137929169-137932345:+
Coord C1 exon
chr6:137929169-137929262
Coord A exon
chr6:137929263-137932294
Coord C2 exon
chr6:137932295-137932345
Length
3032 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GCTGTCTGTCTGTTATGTAGCCC
3' ss Score
6.13
Exon sequences
Seq C1 exon
ACAGCCAACGGGAATGTGGAGGCCAAAGTGGTGTGTTTCTACAGAAGGCGGGACATTTCCAGCAGCCTCATCGCGCTGGCTGACAAGCATGCAA
Seq A exon
GTGAGTCTGTCTTCCCTGGGCGATGATGCCTGTCCCCTTCAGTACCTGCTCTTGAGTCCTGGCTTCACAGGCCCTTCTGCTGGCTTGCCTTCCCCGTCCGTGTGCAGCTGATTTCTGCTGGTTCACCTTTACAGCTCTGTGCATTTCATAGTCCCTCTCTGGTCTTGCTTACCCATGGGCTAGTGTGAAACGTCCCTCTTCGTGCTTCTTGCTAGTGTCCTATGCTCACAGTTAGGGCGAGCCTGGGATGTTGGTGTACCTGACTCTTGGCTTGAGCCCATAGGGCAGAGGGTAAGGAAGGTGCTGACTCAGAGCAGAGGCCGTGGTCACTGCCTGGCCCTCGAGACAGATGGTTTTAATGTTACTAGAAGATGTCTACTGTGCCCTCAGTAGTGTTTTCAGAAACAAAGACCTTTTTCCTTACTCGGGAAACTCAAGCCTGAGTCTGATAAGCGTGGCCCAAGGGCGCTTTGCCCACTGGACACTTGCCTGGTCCTCCTGCTTAGCGTCTGGTCTCTCACTGAAACAGGCCCTCATAGACTTGTGTGCTCTGTGTGCTTGGGCACATAGCTGGGGCAGGGCTGTGTGAACGTTGGACAGCTGCTGAGCTCTGGGGGGAGGTTCCCAGGAGCCACGCACTTCTGCTCACCTGGGAGTCCTACCTGAGCCTGAGAACTGAGGCTGTGGTCACTGGGGTGCTCTTGCAGCAGGTGAGGAGCACAGTTGCCTCAGCTGTCCACTCAGGGTAACATCCATCAAGAGTTCAGTAAGCACCATCCCTGACACTCGGTAGCTGGGTGGAGGGCTGAAGACCCAGTTGATAGCACACATGCACCAAGCACACACGCTCTCCATCGTCCCCATTCCTAACAGGCGGGGTAGGGTTGCAGGAGCCAGCATCTCTTTGTGGTGGCAGCCAGTCAAATGGGAACCCTAGAAACCTACCCTAAGCAGGAGTGCTTGAGAGGCAGGTCTAGAACTGGCCGTCCTCCCCAGCTCTGAGGCTGGGTTAGGGAGGGGCAAGAAGGAGCCAGAGCTGACTTTAGAGTAGGATTGGCTTTCTGATGAAGTCCCTGTCACCCTATAGGCAGCCCTGGGTAACTCGTGCTAGCACAGCATTATGCGCCTTTCACTTTATTTCCAAAATGGAAATGCAGCTCCCATCCTAGCCCAGGGCCTGTGTTCCCGACTGCTTTTGAATGCAAAGTTGGGTTCCTTGACCTCTGACCTCAAAGCCCATGCCCTGGCCTCTAGTTGCATGTGGTGGATGCTTCCTGAACCGACATGATGACATAATTGTAGCCCTGTAGGTGTGGTTCTCAAGTCTCCAGTAGTGTTGGGGCCATCTTGTGTCTACTGCAGTGGAGGGGTGAGTCTGCTGGAAGGGCAGTGACCTGCTTTAAGAATCAGTGCATGTCAGAACCTCACTGCTGTCCAGATCCACAGAGGCGCTGCTATGTCTGTGCAGGAGCATGTGCGCTGTGAAATCCCGGGCATGTTACCTCCCAGAACCAGGACCTTACACTGTGCTTCTGGAAAAACTGCTCAGAGCATCTCTGGCCGGGCCTCCTGAGAGCCTCAGTAAGCCAACAAGACAGGCAGTCAAGGGTGCCAGGGTTTGCAGGCTGACTCTTCTTGGCCTGTCTTGTGGTTCGTGGGTGCTCCATTCCATGGTGCTGCCTCCTGGTTACGTACAGCGTCCTATATCGGAGGCACACACCATTGATTGCACAGTAGGGCTCCTTACGCAGGAGCTGGAGACTGAGAGGGCTCCCAGTTGTTGACCTGCTAGGGTGTCCACCCCAGGCACTGCACCCAGATGGGAGACCAAGCACTGTAGCCTGTGATGCTTGTGTAGCAGGAGCCCCTTCCAAATGCCACAGAGGGAACTGTGGCCTGGCCTCTCTGAAGTACCCTTCAGAGTAAGGGTAGGGCTTAGCAGAGTGTCACGAAAGGTGGCCTGAGATGAGCCTTGGGTTGGGAGTATGGGTTGGGGCTGTCCCACCTGCCTTCAGGATTGATCCTTTGAAAGGTCTCTAGGGAGAGCTGGAGCAAGAGGCTGTGCATATGGCTAGAAGGTCTGGCCCTGCTGCAGGCCTAGAAGAGATGAGGGATCCTGAGTCAGGGTTGGTGGGTGACTGTACCTGAGGATCTGACACGTGCACAGTCTGCAGGCCCCTTTTCCAGTCCCCTAGATACGTAATAACAGAGTGGCGTGGTTGGTGGCCTCATGTAATTTTGATGTCTTAGGCCCCAGATGATGTGTGTGCTTAGCTCCTGACTGCTGGGCAGGAGCTGCTCTGGACAGACCTGCCTGCCTTGTGATTAGGAGGAAAATAGCTTAGTAGAGACGCCCCAGGCTTCTGAGACCCGGTCATGCTGAGAAGAAATCTACCTCCTCCTGGCTTCCGGCTAAGGGATAGCCCTTCCCAACATGCTTGGCAGTCACCACAGGGGGGCAACAGAGAGCAGCCATGTCTGTTAGGCTGTCACTCTGCTGGGCTGTCACAGTGCACACTATTCTATACTCCTGTTTTGGGATGTAGGCAAGGCTAAGGGGTATTTTGTTGATACAGGGAAGTGGGCAGTAGCCACGGTGCTAAAGCGTTTGCTATGACGTTGGTATACCCTGTGCTCTCCCTGTAGTCAGCATCCTTCCTGCTGGCCTGATGCTGTTCTCTTGCCCTTGTCTGGGCAATCTTGTCTGGAGGCTTGGACTCCTGTTCTTGCCTTTTAGGGAGGAGCTAGCTCCTGATTGGTGCAGTTTGTGTGAGCAGTCTGGCAGGGGCGGACAGCTGCACACACAGGGTGGGGGTCTCGGGCAGTAGTTGGAAGAGGGATGGGTTGCAGTCGGGTGGGCAGCCTGAATGCTGGAGCAGTCAGGGGACATAGATAGTGTTTGGCTGGGTGGTATCTGTCCTCCACTGGGAGGCCTGTGGCCCCCATGTCTCCTCGGTCCGGGCCCTGGGCAGGGAGCAAGCGCTGGCACTGGCCCTAACCTGCCATCTGGGCGCTGTCTGTCTGTTATGTAG
Seq C2 exon
CCCTGTCAGTCTGCTATAGAGCCGGACCGGGGGCGGACACCGGCGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711:ENSRNOT00000006521:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(19.9=100)
A:
NA
C2:
PF0142613=BAH=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]