GgaINT0039130 @ galGal4
Intron Retention
Gene
ENSGALG00000008951 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr8:17849547-17849860:-
Coord C1 exon
chr8:17849774-17849860
Coord A exon
chr8:17849646-17849773
Coord C2 exon
chr8:17849547-17849645
Length
128 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCATTGCTTTTACTTTGCAGAAT
3' ss Score
9.54
Exon sequences
Seq C1 exon
ATAATTCTTTCAGAAACAGCAAACAGAATATTTCTTGCTGAAAGTGGAAGAAAAATTTTATCTGCCCTAATTGTGAGAGCACGAAAG
Seq A exon
GTAAAAGCCTTTTTTTTTTTAACTAATGTTTCACTGCTAAAGTAACTTCTACCATAATTCATTTTATAATGTAAATAAACCATCTCTTGTGTTAGGTTTGCTTGACATTCATTGCTTTTACTTTGCAG
Seq C2 exon
AATCCAAAGAAATTTGAAGATGTCTTTGATGAAATGATATATTTCTTGGAACAAACGGATCACTGGGATAATACTGAAATGGAACTTGCTGCTAGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951:ENSGALT00000014556:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAATTCTTTCAGAAACAGCAAACAG
R:
TCCTCTAGCAGCAAGTTCCAT
Band lengths:
186-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]