HsaINT0061418 @ hg38
Intron Retention
Gene
ENSG00000180488 | MIGA1
Description
mitoguardin 1 [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr1:77860040-77861322:+
Coord C1 exon
chr1:77860040-77860126
Coord A exon
chr1:77860127-77861223
Coord C2 exon
chr1:77861224-77861322
Length
1097 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
AAATGTGTTTTCTTCTTCAGAAT
3' ss Score
9.97
Exon sequences
Seq C1 exon
GTAATTCTTTCAGAATCAGCTAACAGGATATTCCTCGCTGAGAGCGGAAGGAAAATTTTATCAGCTTTAATTGTGAAAGCACGAAAG
Seq A exon
GTAAACTTGTTCTGTTGGCAAGATTTTTACCATTTACAAAAGTTGTTTTTACCCTTTGAACTGAAGATTAAGACATTAAATTTTTGATAGAAGAAAAATTTTTGTGGATAGTTGAAAAGGGCATTAAGTTATGCTCGGGTTGAACTATGTATAAAGTCCACACTATTTCAACCAAGTTGTTTCTCATAAATTATTTCCAGTTTGCCATAAACTCTGTAAATGTCATGGTGAGAATTATCATTAGATCTGCTGCTATAACCATCACTGTTATTATTACTAATGCCTCCTCTTTTATTACCTCAATCCTGTTCAGGAAGAGGGTTACAGGAAATAGCGTAGGTCTCAGAAATCTGGAATACAAATTGAACTGCCTCATCTTCATGTAGTTGAATGAGGCAGAAGCAATGACAAGAACTTCATTCAGACTGTAAGGAACCACCTTACTTTATGCAAGGTTTGTCCAGATGATGATAAAACAAAACAAGCCTTCCTTGAGCCATTTGCACACCTAGTTTTCAGACTCAATCCCTTTGAACTTTAATTCTTTCATTTATATAATAGAATTGTATTTATATTACCTCATTTCAGAGGGTTTTTAGGATGATTAAATAAATGATAAATGGGAAGCAACTTAAAGAATAAAGTGTTAAGTAGTGTAAAGCTAAGTATATGTAAGGTGATACTATTAATACATGCAATTCCCAATGTAAGTCTTGTGTTGCTTTCTTGGCCTTCTCATGACAGATAAACTCAGTGATTTGAACTAGGGTTCCTCCAAAAGAAGCAGAACTGCAACAAAAGCCTCACATAATGTCTGCTATAACCAAATTTTCATTTTAATTACTGACCAAAATAGGCATACATATTTGAGTAATAAATAGTTTGCTTGTGACATTTTACTGACATTCTTTATCTTGGCTTCTGCAAAATGTTGCAATAGCAAAGTAGTAAACCAGATAAATTTGGCATACCTTTAAAATGTATTTTAGTTCAGTTACCTAGTAGAATTAAGATCTACCAGACTTATTTGAAGAGTAACTTTCTTTGTAGCTTGTTATAAAGTTGAGTTTAGGGTTAAAATGTGTTTTCTTCTTCAG
Seq C2 exon
AATCCAAAGAAGTTTGAAGATGTTTTTGATGAAATGATCTATTTTTTAGAGCAGACCGATCACTGGGGTAGTACTGAAATGGAACTTGCTGCTAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488:ENST00000370791:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(5.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTCAGAATCAGCTAACAGGA
R:
CCCTCTAGCAGCAAGTTCCAT
Band lengths:
182-1279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development