DreINT0066851 @ danRer10
Intron Retention
Gene
ENSDARG00000020596 | fam73a
Description
family with sequence similarity 73, member A [Source:ZFIN;Acc:ZDB-GENE-041010-193]
Coordinates
chr2:8871552-8871807:-
Coord C1 exon
chr2:8871721-8871807
Coord A exon
chr2:8871651-8871720
Coord C2 exon
chr2:8871552-8871650
Length
70 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGGCTGCTTGTGTTTTGCAGAGT
3' ss Score
9.28
Exon sequences
Seq C1 exon
GTCATCTTGTGTGAAAGGGCAACTAGAGCATTTCTGGCTGACACAGGGAAGAGGATATTGTCTGCAATAATTGCTAGAGCTAGAAAG
Seq A exon
GTAAGTCTCATTTCTTTCTTCCCTAATGGTCACATTTGAACATTCCCCAATGGCTGCTTGTGTTTTGCAG
Seq C2 exon
AGTCCAAAGAGATTCGAAGAGGTGTTCGAAGAAATGATCTCCTTTTTGGAGCATACCGACCACTGGGAGAACACAGAAAATGAGCTTTCCTCAAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020596:ENSDART00000010257:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(5.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACTAGAGCATTTCTGGCT
R:
CCCTCTTGAGGAAAGCTCATT
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]