RnoINT0092507 @ rn6
Intron Retention
Gene
ENSRNOG00000056332 | Miga1
Description
mitoguardin 1 [Source:RGD Symbol;Acc:1559958]
Coordinates
chr2:257504005-257505641:-
Coord C1 exon
chr2:257505545-257505641
Coord A exon
chr2:257504104-257505544
Coord C2 exon
chr2:257504005-257504103
Length
1441 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
ACACTATGTTTTCTTTGCAGAAT
3' ss Score
11.26
Exon sequences
Seq C1 exon
TGTCTTTCAGCTAATCCTTGCAGAAGCAGACAACAGGTCGTTCCTTGCTGAAAGTGGAAGGAAAATTTTGTCTGCTTTAATTGTGAAAGCCCGGAAG
Seq A exon
GTAAATACATTCTCTAAGCGAGTTTTGTTCTTACTAGTTTCTCTAACTGAAGATTAAATACAGGGGCTGGTGGGAGAGTTGAGCAGGCAAAGGCCTTGGCACCAGACCTGACAACCTGAGCCGGACCCCAGGGCCAACAGTTCTTCTGTCACCTCACACAGAGGCTTGTGCCACGAGTCCTGCCGGATGAAGAAAGAGTCTAGCAAGTTTTAGAGTAAAATGTGTGTTGAGTTTTAATAGTGCATGAAGCCTTTGTAAGTAATCAGAAAGGTCCACCCAACCCTGTTGATGTCACTGTTACTGAGACAGAGCCTGGATGCTCCTCTAGTTGGTCTGGAATTCACTTTGTAGATCAGGCTAGACTCGAATGTGTGTTGATTCTTTTACCTCTGCCTCATGGATGTTGGAACCCCAGATGTGCACGACCCTGGCTAGCGCAAAGAGCTCTGACTTCTGTGTACAAAGCTCATGGCTGGGTTGTTTGTGATGACTTAGAACTGCCCGTGGCCTCTGGTGATGTCTGGTGAGACCTGTGGTAGATCCGCTGCTTCAGCCAGGTGTGGGTAATACCTCCTCAAGCCTATTCAGGAAGAAGGTGGAGGGATGAGCCCCGAGGAACCTGGAGCACAGACTACTGTCTGGCGCTCATCTTCGGTGGGCCGAGTGAGGCGGAGCCTTTGATGAGAACCCCTTCAGACTGTAAGGAACCACTTCACTTCATGCAGGCTTGTCCAGAGGAGCAGGCCTGCCCTTAGCCTTTTGCCCACCAGGTATTCAGCTCTAGTTCATTTACTCTCAAGTCCCTCTCTGCACAGAGAAACTGTATTCTACCCTATTTCAGAAGACTCTTCTGAGCAGATAAATGGTAAGGGAGAAGTCACCTAAGCATACAGTACTAAGTGACTCTCAGGTGACACTATGTCCTTGGAGTTCACAGGATAAATCCTGGGTTGCTTTCTTGGCTTTCCCATTGAAGACCAGTGCAGCAGGAGGAGCCCATCTGCAACAAAAGGACCCCAGCCAGGCTTCTGCTGCAGCCCTGTTTCCTCTTACAGTCTGTCTGGGCAGCAGTTTGCTGATGCTTTACTGGCGTCCCCGTTCCTGGCTTCTGTGAACTAGGACACAGCTGGTAATGAAGGGCTGAGAGTTAGACCACTTGCCTACCCTGTGGTGGAAAAAGGCCCCAGTTAAACCTCTGCGCCATAGAACCACATGTGTAACCCATACTTGTAAGGAGGGCAGGAACTTGAGGTCACCTCCACTATTGTGGTCACTTGAGGCCAGGTGGGGGCTAGAGATGCCTAAAAAAGGAAACGACTTGTCATGCTTGAAAATATTTTCTAGAATAATTAAGATTCAACTTTCTTGAAAAATAACTTATTTCATAGGCTTAAGTCTTGTTATAAAGTTATATTTGGACTACACTATGTTTTCTTTGCAG
Seq C2 exon
AATCCAAAGAAATTTCAAGATGTTTTTGATGAAATGATCTATTTTTTAGAGCAGACTGATCACTGGGATAGTACCGAGATGGAACTTGCTGCCAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056332:ENSRNOT00000089370:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PD(1.8=17.2),PF102654=DUF2217=FE(13.3=100)
A:
NA
C2:
PF102654=DUF2217=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCTAATCCTTGCAGAAGC
R:
CCTCTGGCAGCAAGTTCCATC
Band lengths:
190-1631
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]