GgaINT0039190 @ galGal4
Intron Retention
Gene
ENSGALG00000006237 | PKN2
Description
protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
Coordinates
chr8:14125889-14127703:-
Coord C1 exon
chr8:14127594-14127703
Coord A exon
chr8:14126033-14127593
Coord C2 exon
chr8:14125889-14126032
Length
1561 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
3' ss Seq
GTGTGTGCTTGCTGTCATAGTCA
3' ss Score
6.76
Exon sequences
Seq C1 exon
ATGAAGTCTGTGCTGTACTGAAGCTGGATAACACTGTGGTTGGTCAGACTAGCTGGAAACCTATTTCCAATCAGTCGTGGGATCAGAAATTTACACTGGAACTTGACAGG
Seq A exon
GTAAAGATGCAGTCTTACTTCATTGACATGTATAGTTAATTATGTAGATTAAAATCATGTTGCTTTATATATTATTTATTTATTTATTTATTATTGTTGTGGTTAAGTTCAAATTATACGTACACAAGTATTCTTGTCCCTAACAGAAAGAGTAACCTGTAGATAAGCTGATTTGGTGGGTTGCCATTCTACAACTTTTATCTTTTCTCGCTTACAAGGAGATGTAATGTCTTTTCCAAGGCCTAACACTTACTGTCTTTTTAGCCTCTAACAAAGGTGCTGAGATCAGCTTTTTATTTATAAGGAAACTATATCAAATACAGTTCAGATATTTTGGCAAACCTATATCATAGAATTTTTACAGTGCTTATCCATAATTATTATACGTTCTCAGGTGAAGCAGATCAGTTCTTATTTTTCAATCAGTGTAAAGTAGGCTAAAAATTAAGCCTTGTTTTAGAAACCTTAAAAAAAAAACCAAACTAAACTGATGCATAGACATAATTAGAAAAAATGAATAAAAACAGGAAAAAACCCACCCCTACCTTCCTGGTTTTACTGACCAGTATTTCACTCTCACCACCCCACCTGTCTAAGCCAAGCCAAATCCCTTCCACAGTGAAGAAAGGACGCAAATTTAGACTTGCAGCTAGAGAAATCGAGGTTCCCAGCAGGAGTACAGAACAAAACTAGCAGTTATAGTCTGTAACTTTTTGTGTATTATTTTCAGATGGCTTTTAAGTGGCTTTTTGGTGCCAGACAAGAATCTTGCTTCTTGCTGGGTGTGGCCACCTATCATCCCCCTGTATTTCAGACCCGTGTTCTCAACCCTGTGATGTTTTTCTGTTGCTTCCTCTTAACTTCTTTTTCCTTGAAAACCCATACGTATCAGATAAAGAGGGTGAGCTGATGCACCATGATGGAATTAAGTTATGCCATCTGAAAACAGTACCACACAATGCTGACGCTGTATGGTGCGCTGCAGTTTGTAGCAAGTTTTGTTCGGAGCTTATAAGATGCCTTAAGAATGTATAATCCCACTGGCAAGATAGAGGCAGTTCCCTTCACGACCATGTTACAAAAAACTGCATGTATTTCTAGAAATGGAGTATAAAGTCTTGAGGTACACATCATGAGGTGTACCCAAACGCAAAAGTGTCACTGTACAGCCATGAAATTCAATGGACGCATTCAATACCTGTAATGTAAAACATCAGCAAAGCTGAGCTTTCTAAGAACAGTTAAAAACTTTTTCCCAGAGCTTAAGCTGTGAGGTACTGAACCAGTGCTTTTGTTAGACTGACTGAAAACTGGTGAATTTTTTTTGACTCTTTCCTTCTATTCTTGGCATTTTTACACTTTTTATTTGGATGCTGGAGATCACATTTGAACTCATGCAGAATGATGTATAGTGATCCTAGTGAGAGTTTGCTCACTGTGGCTCACAGCCATAAAAGCTCTGCATCTTGAGCACGAAGCGCTAGATCTTATGGTTATGGAGAGGTAATTCTTGCAGAACAATTACTCCTAAGTAATTTCCTGTGTGTGCTTGCTGTCATAG
Seq C2 exon
TCACGTGAATTGGAAATCTCAGTTTATTGGCGTGACTGGAGATCCCTGTGTGCAGTGAAGTTTCTGAGGCTGGAAGATTTCCTGGACAACCAACGGCATGGCATGTGTCTGTATCTTGAGCCCCAGGGCACTCTGTTTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006237:ENSGALT00000010087:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGCTGTACTGAAGCTGG
R:
TGCAAACAGAGTGCCCTGG
Band lengths:
246-1807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]