GgaINT0039928 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:22591982-22595167:+
Coord C1 exon
chr8:22591982-22592129
Coord A exon
chr8:22592130-22595022
Coord C2 exon
chr8:22595023-22595167
Length
2893 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
TCCCTTCTTCGCAACTACAGTTT
3' ss Score
5.89
Exon sequences
Seq C1 exon
CCGGGTGCTGCACTTGGCCGCCGTCTTCTGCCTGACGTGCGTGCTGCTGAAGGCCATCCAGCTGTACCACCGGCGGCGGGAGCTGCTGCGGGCGCTGTCCGCCTTCCCCGGGCACCCCACGCATTGGCTGCTCGGGCACGTTCAGGAG
Seq A exon
GTGCGGCGGGGCGCGGGTGGGCGCTGCGGGAGGGGGTGACACGGGGGGGAGGGTGGGTGATGTGCGGGAGGACCCTTTTTCTCCCCGTGCCTTTTCTCTGCTTGTGATCGCCGGGAGCGGTGTGTGGATGTGATAGGGAGACAGGATTTAAGGCTTTATGAGGTTGATTTGACCCCCTGGCTAACTACACGCATGCATATAAGAAAGTCATGCTTGGAGTGCGTGGCTGTACCTCAAGGTATGCATTTGTCCGTGCAGATCAGCTTGGCTGTTGGTTGCTGGCAGCTTTGTGAGCTGGCCGATGTGAAAGGCTTTTTAATCAGAACAAAAATGGAAAAGCTTTTGGATTCGTGCTGGAAGCGCTCAAAGCCTCATCCAACCTGGCCGTGGGCAGCCTGCTCTAGTGGAATGCATCCTTGCCCTGGTGGTCTTTAAGATCACTTCCACCCCAAGCCATGCTGTGATTCTAAAAGCATGCTGGCACCTCACGTGGGATCTGCTGATCCCCTGCTGTGGCACATTAAATAACAACCAACCCAAAGAACAAGGTGGAAAAATTAGTGGAAAGGTTCAGCCAGACAGGAGACCCCTGAGTGACCACATCCACGCTGCAGTCTCTCTGTGTCTGACAGTACAAATGAGCTCTTGGCAGTACAAGCACGAGGCCAGGCCAGCTCAGGGGTTTGTTGCAGTGCCAGTTAGACTTTAAAACTGCAATTAAACAGAGCATGTTCATCAGATCTCAGTTGTGCCAGATGATACTGGGACGGAACTCTTTGGTGCTGATTACTCACACCCATAATTGTTAGGTTGTTCTGAATTTACCTTTCACCTTGGACAAAGAAAACCTTTTATATTGGGCATGCTTCTGTTACTGAAAGAGAGTTCTGTTAGTTTTACTCAGTGCTGCTAAGTTTGCTAGAAGCCAGCAGTTGTGAGCTGGTGAGGAAGCTGTCAATGCCCTGGACACGTGCTGAAAGCAACATCTGTAGGTGCCGTGGTGGAAGAGAAGCTGGCAGGATGTCTGGCAGCTGTGTTCAGGGGAGCACTGAGAGCTCCTATTTCCATCTAGTTCAGCCTAACTGCAGTACCATGGCTATTCAAACCCAGAGCATCAGTTCCTGGCCACCCTTCCTCATGGGCACAGCTCCTGGGGAGCGGAGGGAGGTGGCCGAGTAGGGCTCAGTCCCCGAGCAGCCTCTCCTGTGCATCTCGCCTGTTTCAGCATCCGGTGGAGGATGCCTATTTTTGACCAAGAGTAGTGCAGCTCAGTGCTCAGATTTCAGCTACTGTGTTTCCTCTGCTTCATTTGTTATCAATGTGTGGTCATTAAAAATCTCCTTAGGCACCTCTTTCCAGATGCTTTTAGTGCTGGATCCATTCCAAAGCTTGCATTTCAATGTGAGATCGTGCTATCACTTTTCCTCTTTAGAAGAGCTGAGGTTATACTTTCCTTTCAAAACACCCAGGGGAGGAAGAAACGGAAGTGCTGTTTTGTATTTTTGTTGTTGTTGTTGCTGTTGTTTTTTTACCCAAAACCTCATGTCTGGAGCTCTGGTTAAGAAGCAGGAGCTGTCAGTGGACGTTCCTCTACGTCCTTGTTTGGTGACCACAATAGAACTAGAGGTCATGGCCTTAGGTTTCTCCAGGGGAGGTTCAGGTTAGATAGTAGGAAAGGTCTCTTTTCAGAAAGAGAGGTGATGCAGTGGCACAGCTGCCAATGGAGGTGATGGGGTCACCGTCCCTGGAGGTGTTCAAGAACCATGGGGATGAGGCACTGAGGGACGTGGTCAGTGGGCATGGTGGGGTGGGGTTGAACAGGATGATCTTAGAGGTCCTTTCCAACCTCAATGATTCTGCCATAACCTCTCCTTGCACATGAACTCATCTGCCTTCTGCTCTGGGATTTTTCCCAGTGACATAGATCAAACTGGGTGTCAATGCTCTAAAGGTGCAATGACTGTTACTGGGACTTGAGCCATCTGGAAAAGCCACACACAACGAAGCTTATAGCTGCCCCAGTTTCTTCCAGCATGTTTATGCTTTCTGTTATTGCACCAACAGGAGGAAACATAGGTGTCATGCCAAGTTCCCTCTCTGCTGACACTGTCTAAGGTATAGACTAGTGGGGGGACTCAGCTGCTACCGGACCCCCTGGGACAATGCTGGGGCACAAACACCCGCCTGAGAAATGCCAGCCAAGCAAATAGCTGAACCGAGAGAAGTCAGCACTAAAGGAACTGAGCAAACATTCACTCAATTCAGTAAATAGGGTGACATTTCAGCTCATTTCTACACTGCTATTGAATTCGTTGCACTTCAGCAGCTACCGTTTCAGCCCTAGCTCACCAAAATCCTTCCCTCTGTGCATTGTCATAGCTGGACTACATCTGTGCATGAGTTAGCAGCTTGGGCAGAGCAGTTTTTGTTTAAAGAAAAGGCAATTAGTACATGTGGACTTTTTGACTCTGCTTGTGACTCTTTGCACTAACCCAATCTAACCAGTTTGCTGGTTGTTGCCTGTGTAATATACAATAAAACTGGCTGTAAAAGCAATAAAACTATGATTGCTTTCAAAGAATGAACTGCCAACTACCACTGCTACAAGTAACGATGTCCATTCATGCAGCAATAGGCAGTATGCACTTCTGCCCATAAGGGTGCTCTCCATGGCTATGATCAATTGATAAGGAATAATTATTTTATATGGTGGTTCAAAGTAATAAGCACTTCTGCTTCTCCTGCCCTGCAAACCAAGGCCAGCCCCATGCAGGTGATAGCTTGATTTTGTGATGCAGGAAGACCTTGAGCTTTTGAAAACAGCGGCTAAGGAGATTTTNTATGTTCACCAAACCTGAGCATTCTGTCTCTTTTCCCTTCTTCGCAACTACAG
Seq C2 exon
TTTCTCAAAGAAGAAGATGTGCTGGAAAAGGCAGAGGCATGGGCACTGAAGTACCAACATGCCCACCCTATCTGGTTTGGGGGTTTCTCGGCAGTCCTGGTGATCAACGATCCTGAATATGCCAAAGCCCTTTTTGCCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688:ENSGALT00000017050:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(7.8=28.6)
A:
NA
C2:
PF0006717=p450=FE(26.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]