DreINT0054416 @ danRer10
Intron Retention
Gene
ENSDARG00000004964 | cyp4t8
Description
cytochrome P450, family 4, subfamily T, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-031219-3]
Coordinates
chr16:4808838-4811289:-
Coord C1 exon
chr16:4811074-4811289
Coord A exon
chr16:4808983-4811073
Coord C2 exon
chr16:4808838-4808982
Length
2091 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
CCTTTCTGAATTATTTGCAGTTC
3' ss Score
7.71
Exon sequences
Seq C1 exon
CACTGAGGTCAATGACAGCAGCACCAGACGCTTCTCGACATGCTGCTCTACGGGATTTCTCCGTTTGTGCTCTCCGTCAATCATGTTTTTGCGCTCATCTTTCTGGCGTGTTTGCTGACAGTGGTGAAGTTACTGATTGTGAGGAGAAAGGGGGTGAAAACTATGGAGCGTTTCCCTGGACCTCCTGCACACTGGCTCTTTGGACACGTTAAGGAG
Seq A exon
GTAAACACATAACTACAGTTACATAACAACAGTAAAATGGCGCTAACGGCACTTAAATTAATTTTAGGGGGGAAGCAATTGAGGTAAAGTTGGTTTTATATTCACACATACGGACTTTCTCCTTAATAATATAACTATTTAAGAAAAGCATTGCAAATTCTAAATTAGGAAATTATATAAGCAGCCAATGGCTATCAAAGTGTTGTTCACAGTTAAATAGTGCTAATGTTGTATTCAAGTAGGAATATTTGTATGCGTTTTCAGACCGAATAGTCAAAGTCAAACAATTTAGGGAGCGTGTCACAAGTTTTCACTGAACGAATGTATACTTGTATATTTAAAAAAATGGTGATATTTAACAGCTTAAAGGATCACTAAAAAGATAGCGCACCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATACTTTCATTCATTTTCTTGTCGGCTTAGTCCCTTTATTAATCCGGGGTCGCCACAGCGAAATGAACCGCCATCTTATCCAGCAAGTTTTTACGCAGCGGATGCCCTTCCAGCCGCAACCCATCTCTGGGAAACATCCACACACACATTCACACAATTTAGCCAACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCAGAGCACCCGGAGGAAACCCACACGAAGGCAGGGAGAACATGCAAACTCCACACAGAAACACAGAAATTGATCATTTTCTGATCCCTATTATGTTGTTTTGGAAATATATAAACAGATATTTTTAATATACTGTCAATATACATTCTTTCTGAATTTATGTTTCAAAATATACTGCAAATCTCAGATTCATAATGCTGAAATTGATCAATAATTTGTATTTTTTACATTGTTATTGTAATAATGTTAATGTTTAATGTCCAACTAAAACATTCCATGAACTATGTATATTCTATATATATATATATATATATATATATATATATATATATATATATATATATTCATTCATTCATTTTCTTTTCGGCTTAGTCCCTTCATTAATTTGGGGTCGCCACAGTGGAATGAACCGGCAACTTATCCAGCATATGTTTTACGCAGCAAATGCCCTTCCAGCTGCAACCCATCACTGGGAAACATCCATACACACTCATTCACACACAAACACTACAGACGATTTAGCTTACCGCATATACCACAATTCCCCTAAAGCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCTGGAGGAAACCCACGCCAACACATGGAGAACATGCAGACTCCACACAGAAATGCCAACTCAGCCAGGGCTCGAACCAGCAACCTTCTTCCTGTGAGGTGGCTGTGCTACCCACTCTGCTGCCATATATTCCGATATTATATTCAGCACTGTCGCCTCAAAGCAAGAAAGTCGCTGGTTCGAGTTCTGGCTGGGCCAGTTGACATTTCAGTGTGGAGTTTGCATGTTCTCCATGTGTTGGCGTGGGTTTCCTCCGGATGCTATGAGTGTGTGTGTGAATATGAGAGTGTATGGGTGTTACTGTACTGTATTGCAGCTGAAAGGGCATCCGCCATGTAAATCGTATGCCAGAATTGTTGGCGGTTCATTCTGCTGTGGTGACCCCTGAAAAAGAAGAGACTAAGCCTGGAAAATGAATGAATTCCACCAACATTATATATGAACTCTTTTCTGTTCATGTTCCTGAAGAGTGGTTGCTCATGCAAGAGAACTTCATAGAAACACTAGCCAACATTTTCTGTACACAGTTTATCACGTGTTTATATATTAAATAATTCAGGAGTACTATGCAATGGATGAATAAATGTTCCCTGTATTTGACCTCCTCACTGGAGGGAATCAATCTGATTATTGTCTCTGAGCTGTCTGTGTCTATTCACCTCAGCTATCCGCTGTTCAATGACATAATTATATTGTATGCCAGTGAACAGAACAGCCTTGCATTGCACTCACATTCTTCAGCTGCTACTGGAGGATTTCATGTGAGATGAATAACATTAGAGCGCCGTTTATGTTGGAAGCACGTCAATCATTTTCTTGCCTTTCTGAATTATTTGCAG
Seq C2 exon
TTCCGCCAGGATGGACATGATTTAGAGAAGATCGTCAAGTGGATGGAACTGTATCAGTTTGCCTTCCCTCTATGGTTTGGCCCGTCGTTGGCTGTTTTGAACATCCACCATCCGTCATATGTGAAGACCATTCTCACAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004964:ENSDART00000131949:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.4=23.7)
A:
NA
C2:
PF0006717=p450=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]