MmuINT0045465 @ mm10
Intron Retention
Gene
ENSMUSG00000047155 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1932403]
Coordinates
chr4:115127441-115134281:-
Coord C1 exon
chr4:115133801-115134281
Coord A exon
chr4:115127583-115133800
Coord C2 exon
chr4:115127441-115127582
Length
6218 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
CCTGACCATTTTTACTATAGTTT
3' ss Score
5.69
Exon sequences
Seq C1 exon
AAATTCAGATCTTCCGCGATTGGAAACTGTCAAACTTAAAATAAGACACTCCGCGAACGAAGTCTGTCTGCCTGAATCCAAGCGTGCACCAGCGAATGGATAGCGCAGACTGGAAATCCCGAAGGACCAGCATCTTCTTCCCAGGCAGGAGCTGCCCCTCCCCCACCTCAGTTACACCAGGGCTCACTGGGGAGGGGGCTGGGTGGTTCACGCCAGCTCCGGGCTGGAGAAAGCTAAGAGCTTCCCACCACCACTACCATATCCTCCACCCACCCACTGCCCGCCGAAAAGCGAGCTCAGAGTGATGGAGGCCTCCTGGCTGGAGACTCGTTGGGCGCGGCCCTTGCACCTGGCTTTGGTGTTCTGCCTGGCGCTGGTGCTGATGCAGGCCATGAAGCTCTACCTGCGGAGACAGCGACTGCTGCGCGACCTGAGCCCCTTCCCGGGGCCTCCCGCCCACTGGCTCCTGGGACACCAGAAG
Seq A exon
GTAGATGGAGGGAGGGGCGCAGCAGGATGCTGCCGAGGAAGCCAATAGCCTAGCCTCTGCTTCCATCCCTCCCATGCAGTTTTGAGCTATTCTAGGACTTCCAGCCTGGGGGATGGGGGAGGGTAGGGTGGCTCTCAGCTCCTCTGCAATACTAGGAACTCTCGCATTCCCCCGCGGAAGGGTTACTAGACAGGGAGGTTATTTGGGAAACGTGAATATTGTAAAAGAGCACTAGGTGTCAGCTCAGTCTCCAGTCGCCTTGGTATGTCTTCTGCGTGTATTGTTTAACACTCAGTGTGTTGCTCTAACTCATACTTAGTTGTAGAAAATGTTCAAAAGCGATAGCAATAGTTGACCCCTTGGTTCATTCAGGCCAGGAAAAAAAAAATGTCTTTTTAAAGCTTCCTGTAAAAGCGGGAGGGGCCGCACCCCATTGCTCTGCGGATACTGATTGCCCTATCACTTGCCATATCACTTGTTCCATGTCTCCTGTTTTCAAATCCACTTCCTACCCAGACTGATAAATTCTGTCAACACATTGGGAGTAGCAGCTGTGTGTGCTAAGTCCTAGGTCTACAAAAGGAAAGTGAGTCTTTTCCCTGACGGGCCCAAGTAAGGTACAGACTTGAGCACTAAGAGAAAATGAAAATCCTGGCTTGGAGGGATGGTGTGCCTCCTCCTAGGATCCCTGGGGGAAGAAAGAACCACTAGCTGTGAAGCGCCTGCACAAACTCTCCAGGAATGGGTGGGCTGGAAAGTCTGCCCTGGGGATTTTGCTCCTTGGCTTCCTCGACTATATTATATATATTATATTATTATATTATATCTCTGCCATGTATCATTTCCATGTGCCATGTGGTGACTCGAGGTCCCTTCAGATACACTCAGATGCACATAAACCATGCTCTCTTGTCTTTTCTTTCTCTCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTCCCTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTCTTTCTTCCTTTCCCTCTCTCTTTATTCTCTCTCTTTTCTTTGTTAAAATGTTTTGATTGGGAGTTTGGATTTTAGGTTTGATGTGGACAGTCAATCACTATAGCCCAGGCTGTCCTGGAACTCACTATATAGCCCAAGCTGTCTTCAAACTTGCAGTGGTCCTTCTACCTCTGCCTCCCAAGTGATCACAGTCATGAACCATCATGCTTAGTGACCGAATTTTCTTCCTTCATTCATCCAGCAGTATATACTTAGGCTGACTCCTAAGTCAGCCATTATAAATTAGAAATATATGCTGTGGTGAATATAGAAGTCAGATGGCTTAATGAAATAGTAATTATTTATTTTGAGCATATACCCAGAAGATGAATCATTGAATTTTTTAGATTTATTTATTTCATTTTATGTGTATGAGTGTCCTGCCTGAACGTGTGTATATATACCATGTATGTGCCTGGTACCCACAGAGATCGAAAGAGGACATCAGAATGGTTGTGAACTGCCATGTGGGTTCTGGGAACCAAATTCAGGTTATCTACGTTAATAGCAAATCCTTTAGCTACTGAGCCATCTGAAAAATACACTTTTAATCTGACTGTCACCATTTTAGTTTCCATGAGTTCTGTCTTATTCTCCATTTGTTCTTCCACCAATTATCTTATATTACATAAACACACCACACTTTGACAATAGCCATTTCTCCCTGTTTCTACACCACACACACAAAACAAGGTTTCTCTGTATAGTCCTGGATGCCCCAGAGCTCAAATTTGTAAACCAGGCTGGTCTCGAATCGGAGATGACCTGCTCTGCCTCCCAAGTGCTGGGGCTAAAGGCATGCACCACTATTACCCAGCAACAAGGGCCATTTCTTTATTGTTATTATTAATTATTATTATTATTAATGTATTTTATTTACTTTTTACTTATTCATTTTATATCCAGCTCACTGCCCCCCTCCTGGTCATTCTGTCCCACAATTCTTCTATCCCCTTTCCCCTTCTCCTCTGAGTGGATGGGGCCCCTCTGTGTATTTCCCCCAAATTCTTTGGAAAAACAAGTTGTTAGTGAAGTTAGATTAAGATGTTTTTGCTAGTGGTTCTGATGTAGAAAATCTTAGGGAGCAATTTCAATTTCAGAAAGGTACACTCTTAATAATTAAGCTAAGGATTTTTTAAGGTCAGGAACAAGAACAATGGCAACTGTGCCTCTTTCGCTAAAGCTGGGTTGTTGGTCAAGATTATGATTGATTGCTTGTACTCCCTTGCCCTCAGCTTCCTGATAGGATTTAATAAGAAAATTGTTAATGAGTAAATGTGCACCCTGAGGATTTAAAGTAGAAGTGACTGTTCTTTAAATAAAGGTCTAGATTTGTGATTTTTTTTCTTTTAAAATGTGTAAGATTATTTTTCAAGATAAACTTGATCCTTTCTTTGTAACCACAAATTGCAGCCTGCCATTGCCCACAGCTTGTATCTCTATAGCAGGTTGCTTAGTTGTGAATGTATGTGGGCTCTTGGGAATATTTTAACCTGTACTGCGCAATGTTTTTCATGTAAAGGAACTGGAGAAACATGTTTTTTTGTTTTTGTTTTTGTTTTTTTAAATGCTAAAACCAAGAAAGAACCAGGTATCCTGGCACAAATAGGCACTTCAGCTGTGAGTAGCCCTATGAAAAGAACCAGTACAGGCAAGCAGGGATGCTAAGGCTTGTCAAGAACCATGTGAGGGAATTTGGAGGCGGATTCTGTCCATCCAATCTTTTTGTTTGTTTGTTTTTTAATTTACTATTTTTTGTTTTGTTTTTCTTTTGCAGTTTCAATAACAGAGCCAGGGCCTACCTAGCACATTCTAAGAAATTAGTCTACCATGAAGCCTCAAGGATCACAATTAGTATTTATTATTATTATTGTTATTATTATTATTAATTATTATTATTAAATCAAGAGGCTAGAGAGATAGTTCAGAAGTTAGGATTAATTGGTTGTTTATGCAGAGAACCTGGGTTTAATTCCCAGGACCCACATGGCAGCTCATAACCAACTTTAACTCCACTTTCAGGGGATCTGATGCTCTTTTCTGGTCTCAGCAGGAACCAGACATTTACATTGTGCATAGACATATATGTGAACAAACACTCAAATACATAAAGTAAATAAATCTAAGAAAATTAATTAACAAAAAACTAATGATCTGTAATGGTTAATTTACAAAATCAACTAAATTCCATTTCATTAATTCTTATATTGAATTTTAGTTTTTCCTTAAGCATTCCAGACATTCTTAATTCAATGTTTTTCATTTCTGATTTTTTTGAGACAGGTCTGTCTGCATAGCCCAATCGGGTCTCTGTCCCAGCCTCCTTAGGGCTGGGATTAGAGGTCTAGGCCACTATCTGAAAGATGTGTTCTTTAAGTACTAGAAAACTATATTTCAAAGCATTTCTCACAGCATCTTCAATGAAAATGAAACAAATTGAAACTGTAATTGATTGCAGATGCTCCCAGGAGAGAAAGCAGTAAGAGTGACTGTTTGTGGGTAACAAGGACCTAAGATGGCCCTTATTCTATCAACTTTGTCAACAAGACAGGCAGCAGTCACTGTCACCTGCTGTGAAGAGACAGTGACCACATCAACTCTTTTTTTTTCTTTCTTATAAAAGACGACACTTAATTGGGGCTGACTTATAGGTTCAGAGGTTCAGTCCATTATCATAAAGGCAGGGACATGGCAGCATTCACACAGGCATGGTACAGGAGGAGCTGAGAGTTCTACACCTTCATCTGAAGGCTGCTAGTGGAAGAATGACTTCCAGGCAGTTAGGAGGAGGGTCTTAAAGCCCACACCTACAGTGACACACTTACTTCACTAAGGCCACATCCCTAAATAGTGCCACTCCTTGACCAAGCATATTCTTTTTTTTTCTTAAATTTTTTATTATTTAAATGCATTTTATACATCAAATATATTAATAATATTGAGTATTTTGAGAATCAAATAATACATAAAAATTTTGTTCAACTTTTATATTCATATCCTTTCATACTCTAAGAATATCATTAATGAATATTTAATACTATCCATATCTAATGTTTAAAACTAAATTGTTTCAAAACATACAAAATATTCTTTGGGAGTTAAGCATAGTAAAAGAGCATAAAATATTAAAAATGAATCATTTAGAAATATATTCAAAAAAAAAGAAAAAGGGGGGAGGCTGGAGAGATGGCTCAGCAGTTAAGACCACTGACTGCTCTTCTGAAGGTCCTAAGTTCAAATCCCAACAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACACCCTTTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTAGATATAATAATAAATAAATCTTTTTAAAAAAGAAATACATTCAAAAACCCTTATTTGATACCACCTGACATAGAGAGAGAATATTTAAAATGCATTATATATCTGTGTACATTGTCTAACAATCGGTTTACTTAAAAAAGATTATCAATGTTTCTAGGAGAGAAATTATTTTACCAGTATTTTAAAAATTTCAAAATAGCAAAAACCCTTTCAAGTTAAACGTTAAGAAAATGCTAATTTCAAGCACAGTGGGAAAAATGATCAATTATATTTCCATGATGTTTGTAGAACATGGTTTTAATATTTCCAACTGTTAACATTGAACAAACAATAATTATTTTAAGATATATTTCGTTGTTATATCTCCCTTTTCATTTCTGATTTTATTAACTTGGATACTGTTTCTGTGCCCTCTGTTTCATCCAGTCTTTTACATGGTTGCAGCCCTTGCCATCTCCATACAACCTTGTTAGAGACCTGAAATTAGCATTACCCAGCTATTGGAAATCATTACTGAATCCCCAACCCTTATATAAACTGCACGAAATATAAACTGTTGTTTTAAGCTGCTAAACTTGAGAGTAATTTGTTAGGCAGCAAAATATAACAATATACAAATAGAAAGGAAACAAAAGTATGCAGGGGTTAGAAAAAAATTACAGAAATCTCTAATACATGAGGGGATATGAATGTGCTCTGTGCTCTTCCACCCTGACTCTGGACTTGATTTTGTGAATGGCTCTGGTCAATCAATGTGAGTGCAGCAAATGTGGCTGAGAGGTTTACAAACTGCTTGCAAGGTTAGATCTGTTCACTTGCTATCCTGGGACCTTGACTCCAGGTAAGCAGGGTCGTGCCATCCAGCTATTCAGCTGAAAGGTAATACAGTAGGCAGAAGAGACCAAGGCATCTAGAATAACAGCCGACCTTTATCTAACCTGCTGTGAACTGTGGCACATTAGTCAGCCTAGCCAAAGTCAACCTAGAAAACTCCTGGCCTAACTCAGCTCAAATTGCCAACCCCAACACTACTGAGCTTAAGAAATGACTATTGGAGAGGCTACCTGCTGTGGCCAGGCAGGAATGCAGGTGGCAAAAGGGACACCAACCCACCCACAAAACTCTTGTCCCAAAACTTATCCTGTCTACAAGAAAGGCAGGGATTGGGGATGGAGCAGAATCTGAGGGACTGACCAACCAATAACCAGCCTAACTAGAGATCCAGCCCATGGGCAAGCACCAATCCTTAACACTACTAATGATACTCTGTTATGATTGCAGTTTAGCATGGCTGTTCTCTGAGAGGCTCCACTCACCAACTGACTCACACGGATGCAGACACCCATAGACAAACAGTGCATGGAGTTTGGAGATTCTTATGGAAGACTAGGAGGAAGTATTACAGCCCCCAGGAGGATAGGAACGCAACAGGAAGACCAACAGAATCAATTAACCTGGACCCTTGGGGCTCTCAGAGTCTGGACCACCAACTAAAGAACATATCCGGGCTGGACCTGGGCCCTTGCATATATGTATCAAATATGCAGCCTGGTCTTCATATGGGTCCTGGAGTGGGGGCTATCCCAAAAGCTGTTGCCTGCATGTGGGATATGTTCTTCTAGCTGGGTTGCCTAGTCTTTCCCCAGTGAGTGAGGAAAGTACACTCGCCTTGTTTAGGACATTATCCCCAAGCTTCGAGATCTTAGAGAAAGACTTTCACCTCCCTACATGTAAAGGAGTCAGGTCTTTCTACTGTGCAGCCTGGTGTCTGTAAGACACGAGCTCACCCCCTGTGTCTGTAAGACAAGCCAAGACAAACCCCACTGACTCTAATCTCCTGACCATTTTTACTATAG
Seq C2 exon
TTTCTTCAGGAGGATAATATGGAGACGCTTGATGAGATTGTCAAAAAGCACCCTTGTGCCTTCCCCTGCTGGGTAGGGCCCTTCCAGGCATTTTTCTACATCTATGACCCAGACTATGCGAAGATATTTCTGAGCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047155:ENSMUST00000106545:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(2.9=22.0)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types