HsaINT0044544 @ hg19
Intron Retention
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450, family 4, subfamily X, polypeptide 1 [Source:HGNC Symbol;Acc:20244]
Coordinates
chr1:47489240-47495803:+
Coord C1 exon
chr1:47489240-47489666
Coord A exon
chr1:47489667-47495661
Coord C2 exon
chr1:47495662-47495803
Length
5995 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAT
5' ss Score
7.24
3' ss Seq
TTTTACTTTTTTCACTGCAGTTT
3' ss Score
9.32
Exon sequences
Seq C1 exon
CAAAAGCAGTTGGGCCGAACGAAGCGTGCGCGCTTTGGTAACCGGCTAGAAATCCCGCACGCGCGCCTGCCTCCTCTCCCCAGGCCTGAGCTGCCCCTCCCACTGCCTTTCCTTCTTCCCGCGAGTCAGAAGCTTCGCGAGGGCCCAGAGAGGCGGTGGGGTGGGCGACCCTACGCCAGCTCCGGGCGGGAGAAAGCCCACCCTCTCCCGCGCCCCAGGAAACCGCCGGCGTTCGGCGCTGCGCAGAGCCATGGAATTCTCCTGGCTGGAGACGCGCTGGGCGCGGCCCTTTTACCTGGCGTTCGTGTTCTGCCTGGCCCTGGGGCTGCTGCAGGCCATTAAGCTGTACCTGCGGAGGCAGCGGCTGCTGCGGGACCTGCGCCCCTTCCCAGCGCCCCCCACCCACTGGTTCCTTGGGCACCAGAAG
Seq A exon
GTAGATGGGAGGGAGGAGGGAGGAAGGAGGAGGGAGGGGCGGAGGAGGATGCGGCAGAGGAGCCCAGCCGGCAGAGAGACGCAGCTTTCTTCCATCCCTGGGGACCCTCCGGCTTGCACTGGCCTTTCCAGCCCGGCCTGTGGCTCTTAGCATCATTTTTCCTTGCTCTGGAGAATTGCTTTCCCGCAGCCCCACAGGGAAAGGTCACAAAAGAGGAAGCTTTGGGGGCTGGGAGAGAGCTATTTAAAGAACCTGAATATGGAAAAAGAAAGCGAGCTGTAACTCAAGTCTGTCTCTCATTGCTTCACCAAGCCTTCCACATGTGTTGCTTTAAAAATAGCATGTTATTCTAAATAACTTATTAGTTGCAGAAAATATGCAAAATCTATCCCAATCGTTGGCACCCTTAGTCCATTTTAACAAGAGAAAATTTTCTTTTCCTAAGATTCTTGTGAAGTAAGGAGCAGCCCCAGCCAGCCACTCGAGAAATACTGATTGATGGAAATTTGTAAAGGGAGACTGTTAGCTTTTGGTCTCTCCCGTTTTTTAAATCCACTCCCACCCCTAATTAAGGTTTTTATTCATTCAACCGACTCTGAGTGGCAATTGTGTGATAGGTACTAAGATTACAAAGAGAAGCTAAGTCCCTCCCCTGCACCACCCAAGTCAGGTGCAGACTTAGGCCACAGAGAGAAAATGAAAATTTAAGGCAATGGGTGCTTTACTAGAGGCCTAGAGACAAGGGAATATCTGTCGGAGGAAAGTATACATCTCCGCCTAGAGAAGGAAGGAAAGTCTGTGAAGGGCTGAGCAGAGTCTTAAAGGATGGTTGGGTGGTGTGGGGAAGGCATTCCAGCAGAGCTACTACACGATCCTTTGGTTTCCCCACTTTCTAGTCTTTCTTATATAAAGCAACCACTTTCAACTCTTTTATCGGTTTCTTCTGGTATTTAAATACTTATTTGTAAAATAGTATTACCATATTGCATCTATTAATTTAATAAGTTTAGACATCTGCTGTGGTTTAGATATGGTTTGTTCGTCCCCACCAAGCCTCATGTTGAAATTTGATTCCCAATGTTGGAGGTGGGATCTGATGGGAGATCTTTGGGTCATTGGGATGGATCCCTCATGAATGTCTTGGTGCAGCTGTCTCCTTCATAAGTTCTCACTCTCTTAGTCCCTCTTCAACCCCCAGAACTGATTGTTGAAAAGAGCCTGCCACCTCCTCCCCTCTCTCTTCCTGTCTCTCACCATGTGGTCTCTGCACACAACTGCTCCTGTTCACTTCCACTATGAGTGGAAGCCGTCTGAGATCCTCCGCAGATGCAGATGCCAATGCCATGCTTCTTGTACAGCCTGCAGAATTGTAACCCAAATAATCCTCTTTGTGAATGACCCAGCCTCAGGTATTCCTTTACAGCAACACAAATGTACTAAGACAACATCCACCTATGAACTTCTTTATGACAGGCAATCACTTACACTTCATATTCCACTGTCCCAGTAACTATATAGTATTGTATTTTTTAAATAGAAAAACTTCTATTTGTATTATTTTTATTATGCAAATGTTATTTACTGCTGATCTAAATGGTCCTCTTTCATTTTATTTCTTTTCTCATAGAACTTTTCCCCACCCCCACAGTATTGTTAACTTCTTCCTTTTCTAATCTGCTTCATTTTTCAATATTTGTCACTATTTTTTTCCAAATCCTCTAATAGATCTGTCAAACACATCTAAATAATATTTCCAAATATGCAAACATGCCAAATCTGTTCGTTTTTTTGGAGATATTTTTGCCACAGACCTCTCCTCCTGTTCCAGTCTGGACTGGTTGTTCTTTAAGCTTGGTATGCAGATATTGTTCTAGGACTCCCCATTGATGCTATCCTGTGTTATGTATCTCTACTGTCTCATGAATACTATGTCGTCTGTTGTTTTAATTGAATTGTTTTGGCATCCTTGTCAAAAATCAATTGACCATAAATGTCAAGGTCTATTTCTGAGTCTTCAATTCTAATCCATTGATCTATATGTCTATCCTAACTCATGGACACAGAGAGTAGAAGGATGGTTACCAAAGGCTGGGAAGGATAGAGGGGAGCTGGGGGAGGAGGTAGGGAAGGTTAATGGGTACAAAAAAAATAGAAAGAATGAATAACACCTACTATTTGATAGCATAGCAGGGTGGCTATAGTCAATAATAACTGTACACTTTTAAATAAAGAGTGTAATAGGATTGTTTGCAACTCAATGGATAAATGCTTGAGGGGATGGGTACCCCATTCTTCATGATGTGCCTATTTCACATTGCATGCCTGTATCAAAAACATCTCATTTACTCCATAAATATATACACCTACTATGTATCCACAAATATTAAAAATTATAAATAAATAAATTATATAGCTATCCTTATGCTAGTACCACACTGCCTTACTGTTGCTTTGTAGTAAGCTTTGAAATCAGGAAGTATGAGTCCCCCGCACTTTGGTATTTTCCAAGATTATTTTGGCTGTTTGGAATCCTTGAGTTTCTATACAAATTTTAGACTCAGCCTATCAATTTCTACAAGGAAACCAGCTAGGGTTCTGCTTGGGATTGCACTGAATCTGTAGATCAGTTTGGGGATTATTGCCATCTTAAGAATATTAGGTCTTCTGATCCATGAACACAGAAAGCCTTTCCGTTTAGTTAGGTCATCTTTAATTTTTTTTGTTGTTTTTTTTTGTTTTTTGAGACAGAGTCCTGCTCTGTCGCCCAGGCTGGAGTGCAGTGACGCAATCTCGGCTCACTGCAACCTCCGCCTCTCGGATTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGCAGCTGGGACTACAGGCACATGCCACCACACCAACTAATTTTTGTATTTTCAGTAGAGACGGGGTTTCACCATATTGGCCAGGCTAGTCTCGAACTCCTGACCTCGTGATCCACCCGCCTCACCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCACTCCCGGCTTTCTTTAATTTTTTTTAACGATGTTTTTGTATTTTTCAAAGTATACATCTTGCATTTCTTTTGTTAAATTTATTTGTTTTGTTCTTTTTAATTTCATTTCAGACTATTTATTGCATTCATAGTGTTTTAGAGTCCACATTCCCTCTTGACTGTCACTAAGTTTTTTTTTTTCTGTTTTTGAGAGGTTTCTATCAGAATTTTGCAGATCAGAGATGACGGACATGTCAAACTGTCTAATATTACCAACCCTCCCCATTTATCAGATCAGGATCCTTTTGGTGATTCACCATGCAGGGAAATCTAGTATCTAAGGCTCAAAAGGTGATACTGTTTTACATAGGCAGTAACATTTTATTGCTACATAATAACTACATATTTATGGAGTACCTGTGATATTTTGATACGTGCATACAATGTGCAGTGATCAAATCAGGGTGTTTAGGGTATTCATCACTTCTAACATTTATTATTTATTTGTGTTTGGAACATTTCAAGTCTCTTCAAGCTCTTCAGAAATATTCAATACATTATTGTTAACAGTGCTATTGAACACTGGAACTTATTCCTTCTATCTAAAGACAGTAACATTTTAAGTATAGTCATAAGGTTACAGAAGGATAAAGTGTGTATAGGGAAAATTCCCTACAAGATAAGAATTTCATTCCTTACTCTTAGTAATACAGGTCTTCAAACATGCCAAGGATATTCCTCCCTTGGAGCTTTGAACATGCACGTCTGTGGTTATATTGCTCTCCCTGCAAATTATTCCTAAAAGAGGCTTGCCCTGACCATTCAGACTAAAATAGCACCTCTAGTACTCTCTATCTCCAACCCTATTATTATTATCTTGGCCCTTATCACTCTCTGACACTATACTGTATACTCTTTTGCTTGTTCATTTATTATCCACCACTAACTACAATATAAAATCTGTGAGAGGTAGGATCTTTGTTTGCCACTATAAACCTAGTGCATGGTACAGTTCCTGGTGCATAATAGGTGCTCAATAAATCCTTTGTTGAATGCATAAATATATTAGGTGCTGAGAAAATTTATTTATTCAAAGATCAATTTACTGCATAGAATAGGCCAGGTGGTTTGACATTTATTCAATAGCCAACATATGGGACCTAGGATGTACATATGCAAGTGTGTGTGTGTATGTGTGTGTGCATCTGCATGTGTACTTGGATGTACTGCAGAGAACATCTATGTAGCTAAGTAGTATAAAGCACTTGGGCTCCAGAGTTAAACTGGAGTTTGAATCCTCATTAGTGGTTGCCAGCTGTACACACTTGGGCAGATCATTTAACCTAGTCTGTAGGGCTCAATTTCCTCATCTCTAAAGTAGGGATTGTAATCATATCTACTTCATAGGGTTCTTGATGTAAATATTAAATAACATAGAACATGGAAAGCATTTAGCAGCACCTAGTTCATAGCAGTGCTTGATAAATGTTCGCTGTTGCTATTTGGGGGCACTATGCATTTTCTGAACATTTCTGAACAATGTTTACTAAATATATGTAGTACCCGTTTTCAAGTGTATTTAGATGCTTCTCTGGGGATGAAGAAATATAAATTAAATATAGTACAGTATTCACAACAGTTTTCTGTCCTTTTTGTCTAGTCAGGAGTTACAAAAAGTATAATGAAATACTTTCATATGGCTGGGGTGTTTATGAAAATTTTTTACCTAAACAAACAATTGTCATATTAGTTTACAATATTCATGAGGGCAAAGGCCTTGTCTTCCTTATATTTCTCTGTATCTCTACCACCTGGTACGTGTGATAGACAATAAATACTTGTGTGTTTATTGTTTGTAAATGAATAAATGAAAAAATATTCACATTGTTGAAAACCACTACTCTGGATAGTCAGTGGGTGCTTATCACTGGCTTGATTATGGCAACATTAACAAAAAAGTGCAGTATTTTAGAAACTAGGTTTCAAGACTCTCAACCTTTCAGTGGCCTTGAACTATCCAGAGAACACTTTATGGGTTAAAATTGCTAAATGATAACAGAGAAAAATGGGAGCCAGAGTTGTCCACCTCTCCAGAGGATGAGAGCAAACAATCCTGCAGCAGATACCGTGTGATTGGTCACACGAGGAAAAATCTGGCAGCCTTAAGATTACTTTGCAGCGGGGGACTCCCACCATCATGCTCAAGTGTGTAGATGGGCACACCAAAACACACACATGCAGGTGCCCTCCACTTTACACAAGAAGCAAATGTAAATGAATCTTGTTTTCAGTGATTTAGAGAAACAATTTAAGTGAGCCATTACTCATCTGCTTCTAAAAGCAAAAACTCCTTCTCTGGTGGTAGTATTTGCACTCTCATTTGTAAATGTTGGAAGCTGAAAGTTTTGTATTTGAGTTTGCTTTAAGATTCACACATCTGTGTAAATGGACCTTCTGTTGTTGGGGGGAGAATTTGGATTTTCTTTATAGATAGAGTTGGCAATTTTTTAGAGAGAAGCATTTACTGCTAAGTCATGAGAAATAATCACTGGTGCATAATTAGAGAGAGGAACAGGAAGAAGAAATGGTGAGCTGGATGTAGGGTCATGCCCCATTTAGTAACTGTTAGTTTCCCACATAGGAAATACTTCTTTTTAGCTTCCAGATCCCACTCCAATCTGAGTGTGTGATGTTGGCAAGTGAGGCAGAGAGTGTGACTCGGCTCACCCTCTATTGGGACAAGAGTTCACAGTAAATGTCATTCAACAGTGACTTGGTCTGGGGGTACAGGATATATTAATATTGAGAAGATAAATACACTAACTTTGTTTAGAGAATTATCCCCCAAGCTTAGAAGTCCCAAAGAAAGCATGTTATGTCACTTCCAGAAAAGTCTCAGGCTCCTCTGCTTGTGTGACCTTATCAGGTCCTGAACTCAGCTTGTGTCTATAAGAGGGGACAGGTCCAGCTTGGCTGGCTAATTACTTTTACTTTTTTCACTGCAG
Seq C2 exon
TTTATTCAGGATGATAACATGGAGAAGCTTGAGGAAATTATTGAAAAATACCCTCGTGCCTTCCCTTTCTGGATTGGGCCCTTTCAGGCATTTTTCTGTATCTATGACCCAGACTATGCAAAGACACTTCTGAGCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377-CYP4X1:NM_178033:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(2.8=22.0)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)