MmuINT0045347 @ mm9
Intron Retention
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115314451-115320310:-
Coord C1 exon
chr4:115320113-115320310
Coord A exon
chr4:115314593-115320112
Coord C2 exon
chr4:115314451-115314592
Length
5520 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
GTCTTCTGTTATTGTTTCAGATC
3' ss Score
11.65
Exon sequences
Seq C1 exon
GGTCCTGCGAGTTTAGCCATGGCGCTCAGCTTTCTCTCTCCAAGCCTTTCCCGCCTCGGCCTGTGGGCTTCTGTAGTGATCCTGATGGTAACCGTCCTGAAGCTCCTCAGCCTGCTGTTTCGGAGGCAGAAGCTGGCCAGGGCTTTGGACAGCTTCCCAGGGCCCCCCAAGCACTGGCTTTTTGGTCATGCCCTTGAG
Seq A exon
GTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGAGATGCCCTTGAGGTATGTGGGGATATGGGGGAGTTGGGGAAGGGAGGTCATCAATTTAGACAAGAGGCTGAGGCCTGGAACCACGGCTCCTAGTCAGCTTTCCCACCCCTGACTTTCAAGCTGGCTTCAGAAGCAACACAACATTTCAAAGTGGCAGCTTAAGAAAGCCTGAGATGCGTTCCATTCATTCATTCATTCATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTGGTTTTTCGGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCGCCACCACGTCAGGCCCATTATTTTGAGGAACAGAATGCAAGTCGGTGTGGAGGCTTGTTGATAGATCACACCCGGGAGAAATTACATCCTCAAAGTTTGACCCGACAACTAGGCAGTCACGAAGTGTCCTGCTCTATGCAGTGTAAAGATTGCTGGTGACCAAGAGGACGTTCAAAGTAAAAACAGAGGAAAGTGCTGTCTTCTGATGCATCCCAGCGTGTCTGAGAGGTTGGTACCCCCAAAGCTGGGAGGTACCTTTTCTCTTTCCTTTGTCTGGCTGAGGAACTCTGGCGGTTCCCCAGGTTCAGGTCCTGGTTGGGTCTCCTGTTAAGGCAGCTCAGGAGGGGTTCACCTTAGCATCCAGTCTCAGGAACTCCTCTTGTCTTGGGGATCCAGACCTTCTAAACACAAGATAAGGGTTTAGAGTCAGGCAGGAGAAACAGATCCTCCACACACCTCCCCAAACATCTGGAGACTAACATTTTAGATTGGAACTAGGACCCCGAGACTAAGTCTTCTGGTGTGCTTTGAGCTACAGGCAGGTTTGGGAGCCCAGGCATGGATGTCATGGATGAAGTCTCAAAAGCGGGTGTCATTCTTTCTACCTTTTTCTTCTTCCATCTGGGGAATTGACACTGGAAATGAACTTGGTCTCTAATCTGATTTTTGCTCCTTACAGATAACTTGTTGGGGATAACCTATGAACTTACCTGTACCATTGAACACTATGGGTGGGAGGAGGATGTCTTGGGTGACACTAGAGCATTCTCTGCTCCCAGGAGGATGAAGGTGCTTCCCCAGGGGTCCACTTCTGCTCCATTCTTTTAATTTTAGCATCTTACAGCTTTTCTACTAGTTTGAGACTTTTGGAGAGTGGCGGACTTGGTCTGATTTATTCTCATGCCCTCAGGATACAGCACAAAACTTGGGTTAGTACAGGCATGCCTGAATGAATGAACGCAAAAGGCTAGATTGTAGGGAGAGAGGTCCACAGAAGATGGAGAATGGTGGGGAAGGGGGGGTGAGGGATCAGGATGACTTGGGAGGGTCTCTGCCAAGTGTGGAAGGGTGAGGTCACATTCTAAAAGAGCATGAGAGGCATTTGGGAGGACTTTTAATTCCCCTTTCTCTGTGCCCCCTTTGTGCTTACCTGCCTTTCTCAGGATTGGGGAAGTTAGTCCTCAAGCAATGGGCTTTAATAGCATATAGTCCATTCTCTCACAACTCCATGCCAGAGCTGTCTGCTCTCTTCTTCCCAGGTGTTCTATTCTATCTTGAAAGTACACAGAGAGCCTGGAACACAGCCTAGCTTCAGCTTCTTCATGCCAGTATAACTATCTGAAGGGCATTGGCTTGATACCAGGAGGCCATGCCAAGATTGGAGTGGGAAGCTGATCTTGAGGGCTATAAAAGTTTCCTAGGGAACCAACCACAGGCACAGTGCCATTGCATTCCTCCAGGACTTGGTACCTCTGCATGGTTGGATTCACACCTCAACCTGAGAATGTGAAGGGCAGGATGTGGATTTGTTTCCCTAGTGTGAGAAAAGATGGGGAAGTTGAGATTCAAAGGGGTTAAGGTGTCCACTTAAGGACACATATTGGTTCAGGATTCAAGTCAAAGCTGAACTAGGGACTCCTCATGCATTCTGGGCCCTAATTGTCTTGTAAGTGGTAGGAAGAGTACTTTAAAGGGTCAGGATGACTGACACTAGACACACAAGAACACCAAGGGATAGCCCGCGCAGAAGGAGAGCTACTAAGGTGATCCCCACAAGACTTCCCTGAGTGGCCTCAGAGGGCACTACACAGACCCATAGGAAGGGTTCCTGGCAGGTGCCATTCAGTTCAGGGACCGAGAGATCTTGTTAAGAATCTGGACAGTCCAAAAATAACTGAACTGAGAAGGAGTTTAGGTATCATACTGGAGATACCTGAGCTCTTGTTTTGGGACCTAGCATGTTGTGGAAGAGGAGTCCCTGTCTTCTACCCCCAGTTGTTGGTGTTTCTAACCATTCACCTCTGTCTCATCTGTAGATGATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAACCAGATATTGGGTGTCTTCTATGGCTCTCTACCTTACATATTCATTTTTGAGAAGATTAGAAAACTCACTTAATTTTATTTATATGGGTTTTTTTCTTCATATACACCTGTGTATCACATGTGAGTCTGGTGCTCACAGAGGCCAGAAGAGGGTCTCAGGGACCCTGGACCTTGCAAATGGTTGTGAGCCACTATGTGGGTGATGGGAACAGAACCTAGATCCTCTGCAAGAGCAGGCAGTACTTTTAACTGCAGAGCCAACAATCCAGTCTCTTAGAAAGATTTTTAAGAATTAAACTGCCTAAGTGTGTGTTGGTGTGTATGTGGGTGTAGTGTGGGGATGTGCACATGTGAGTGTAAGTGCTGTCAGAGTTTAGAAAAGGGTGTCAAATTCCCAGGAGTTAGATTGCAGGAGGTTATAGGCAGACCCCTGTGGGTGCTGGGAGCTGTGTCTTTCACAAGAGCGGTATAGCTCTTAACCGCTGATCAGTGTTTCAATATTTATTGGTTATTTTGTTTATTTACATTTCTAATGTTGTCCCCCCTCCCAGTTTTCGCCCCTGAAAACCCTCCACTCCACTCCCTCCTCCTGCCTCCATGAGGGTGCTTCCCACCCCACTCCTGTCCCTGTGCCCTACACAGTGGCATCAAGCCTTCTCAGGACCCAGGGCTTCCCCTCCTTTTGATGCCAGACAAGGCCATCCTCTGCCACATATACAGCTGGAGCCATGGGTATTCTTTGGTGGTTTAGTTCCTGGGAGTTCGGGGGGGGGGGGGGGAAGGGTCTGGTTGGTTGATATTCTTGTTCCTCCCATGGGGTTGCAAACCCCTTTGGTTCCTTCACTCCTTCCCCTAACTCCTCCATTGGGGTTCCCATGTTCACTCCTATGAATATCTCACTTTTTTAGAGAAGATCTCTTACTAAACCTGGAGCTCTCCATTTTGGAAACACTGGCAGGTCAGCAAGCCCCTCCCTCCATCTTTCTATCTCACCCTTGGCTTACAGATTCTAGGCAGGTCAGCAAGCCCCTTCCTTCATCTTTCTATCTCACCCTTGGCTTACAGATGCTAACCACCATGTCTGTCTTTTAAATAGAGGGCTGGAGTTCAAACTCAGGTCTTCATGCCTGGGGAGCAAGTCCTTCTCCCTACTGAGCCTTCTCCCCACGCAGATACATTTTATCCTCAAGCAGTCCCCAAGAGCACTGTAGCTGCCTCACACTGGAGAAGCTGGGAATTTGCTCCTTGGACACTGTCCAACTGATCTTTAGATCCATTAGGGAATGGCCTGAGTGGATTTGTTGACAGGAAGGAAGCTCAGTCACGATTTCTGGTTGGCTCAATCATGTGAGATAGTTCCGTTGGCCTTTGAATGCACTGTTCCCACTTATGAAAGGTCATGGTTCAATTAAGCTTCATTGATGTCCCATTCTGATCTGATTCCCGAAGTGTAACTTACTCAGACTATTGGAGAGCAGTCCTTCCCATTGCTCATTGCTGCTGGGTTTAACACTGGTGCAAATGAAGGGTTGGGGCAGGTTGCTCAGGAGCTGGGTGCAGTGACTTATCTTTATGCCCTGTTTTCCTGTTTCCTTCCTTTGTGAGAAAGCAATCTGTCCCAGATCTGATAGTGGTAGCCTTGTTTAGGGCACTAGAGGATAAATCTGAGGCATTTGTTGTATAACTCAGAGAAGTTTGCCAGCAATCACATGACCCATACAAGAACAATGTTGTCAGCAGTCATTTTGAGGGATTGCAGCTGCAAAACGGGTCCAGATGCTGAGAGCTGTCTTCACTCTAATGGGCTCCTGGGGACAATCAGGGCTCATAGAAGAAGGCTGTCTCTAGGGAGGCCATGGCAGTCTGTGACTGAGGCCAAGTTCTCATGTCTATGGTTGGGATGCTACAGAAGGGCACAGGAATGCTGCCTGGAGCTGGGAAAGACAGGAGCAGAATGTAAGGAACCCCAAGCTGCGGAACAACCCATTCAAGAGTATCCAACTAAGAAGATTTAATCAAATTAAGTAATTAATTAAGAGTAATTAATCCAATTAAGAGTATCAGAGTTCTTTACTTTGAGTGGCAACCAATATTAGGTTAATGCTTCAGAGCTTCTTGGTGCCAAAATTCAGGGGTACAGCACTTCTAAAGACAAAACCCAAAATTACGTCAATGCTAGCTAAGGGTCAGAGTAAGCTTGTAATATTATTTAGTTATTTAGACATAACGTGACAATTATTTTGGTTAATACATCTGGGTCATGTTTGGAGTCACAGAAATGTGTTGCCAAGACACACATGGCTATTGGGAGGGAAGAGTGTTGAGAATTATCTAAGTAGATACAAAATGAAGTCAGAACAAGATGGTGTTACCTTGGTCACTTCAAGTGCATGCAGAAAAGAAGAGAGACAGGGCAGGAGGGAGAAGTTCAGGGATGCCAGCCAGAAAGAAGGAAGGTGCCACGAGTGTTCCTTTTATCTATAGGTAAAGATGATTTTTTATCATTTTTGCTCCTTGCCATTGCACACATAATGCAACCTTTTGGGTGGAATTCAGGATTCAGAAAGATGATTCTTCAGGGAGATTACAGCAAAGTCTGTAGAACACTGGGGCCAGAACTATAGAGAAGGCACAGCTGGTGGTAGGATAATCTCCTGGCTCTTGGAGGGGAGTGGTTTGGGTGAGACAAAGATTCCTGGATTTAGAGCAGCAGCTCTGGGACTGGAGAGGGTATTAGAAATGTACATGAAACAGGAGGATGGAAGTAGGTTCCGGGGGTCTGGACAATATCCTTCCTTCTCTGCCCAGAAACCTGGAGTCTGTAGGGAGTTCTGGGCTCATGTGTGGTCTTTGTCTTCTGTTATTGTTTCAG
Seq C2 exon
ATCCAGAAGACAGGAGGCCTGGACAAGGTGGTAACTTGGACCGAACAGTTCCCCTATGCCCACCCACTCTGGCTTGGACAATTTATTGTTTTCCTGAACATCTATGAGCCTGACTATGCTAAAGCTGTATACAGCCGAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713-Cyp4b1:NM_007823:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.1=36.8)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: